Merge branch 'features/JAL-2446NCList' into features/JAL-2574findFeaturesByColumn
[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62...
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as...
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2361 Blosum is enabled for peptide
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-10-26 gmungocJAL-2286 modal residue check + commenting
2016-10-25 gmungocJAL-2286 use constant for fixed colours
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-02-07 amwaterhouseFormatting
2006-12-05 amwaterhouseSequence is char []
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-10-10 amwaterhouseaaIndex replaces aaHash
2006-08-21 amwaterhouseheader updated
2006-04-07 amwaterhouseMust check consensus length if autocalculate off
2005-08-22 amwaterhouseConservation colour scheme is no more
2005-08-18 amwaterhouseCharacter methods don't exist in java 1.1
2005-08-18 amwaterhouseProceed with upperCase residue Release_2_03
2005-08-15 amwaterhouseHashtable now in array, not vector
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-25 amwaterhouseall can threshold
2005-04-29 amwaterhousejust tidying up unused imports
2005-04-15 amwaterhouseconsensus held in residueColour
2005-04-13 jprocterFixed so that all alternate residues are used to calcul...
2004-12-15 amwaterhouseisGap method implemented in utils
2004-11-02 amwaterhouseJalview Imported Sources start