Merge branch 'features/JAL-1605_html-svg-export' into develop
[jalview.git] / src / jalview / schemes /
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 Jim ProcterJAL-1483 register feature similarity model
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository...
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton...
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store...
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character
2014-11-23 Jim ProcterJAL-1569 formatting
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation...
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
2014-09-23 darolmarJAL-1355
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score...
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation...
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix...
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop
2014-05-01 Jim Procterremove todo
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...
2014-05-01 Jim Procterjavadoc
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow...
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list...
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices'
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin...
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop
2014-04-25 Jim Procterfix for JAL-1268
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim Procteravoid potential NPE
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio...
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula...
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-17 Jim ProcterMerge branch 'JAL-1397' into develop
2013-10-17 Jim ProcterJAL-1397 propagate any consensus/conservation coloursch...
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-08-30 Daniel BartonColour be RNA helices bug fixed
2013-06-23 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-23 Jim ProcterMerge commit '72c628b' into develop
2013-06-21 Jim ProcterJAL-1241 - generate colour for all annotation values...
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop
2013-06-17 Jim ProcterJAL-1027 fix errors in alternative codon table
2013-06-17 Jim ProcterJAL-1027 use alternative codon table in ResidueProperti...
2013-06-17 Jim ProcterJAL-529 - IUBMB nucleotide ambiguity codes and programm...
2012-12-07 jprocterrevised renderer and annotation model to support differ...
2012-12-07 jproctertyping
2012-12-07 jprocterremove mentions of non-functional RNAInteraction colour...
2012-11-15 jproctersource formatting
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA...
2012-09-06 jprocterJAL-1167 method and simple tests for printing score...
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa...
2012-08-17 jprocterMerge branch 'develop' into menard
2012-08-14 Anne Menardlast version stay many bugs ..
2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f9411...
2012-07-16 Anne MenardLast version
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-23 jproctertodo for JAL-1106
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-12-08 jprocter(JAL-1013) gap character index for each sequence alphabet
2011-12-08 jprocterJAL-1027 fixed up nucleotide subt matrix so it is symme...
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is...
2011-10-28 jprocterrefactor to use model API
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-07-25 janengelhardtStart merging of Laurens Code
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
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