| 2017-02-20 |
Jim Procter | Merge branch 'features/JAL-2379pcaMemory' into develop |
tree | commitdiff |
| 2017-02-09 |
gmungoc | JAL-2401 change 'Lower Case Colour' to checkbox with... |
tree | commitdiff |
| 2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
| 2017-02-09 |
gmungoc | JAL-2371 skip upper-casing consensus as it already is |
tree | commitdiff |
| 2017-02-07 |
gmungoc | JAL-2397 PCA gap cost uses last column of score matrix |
tree | commitdiff |
| 2017-02-07 |
gmungoc | JAL-2398 corrected entry for C->R in Blosum62 matrix |
tree | commitdiff |
| 2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
| 2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
| 2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo() |
tree | commitdiff |
| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
tree | commitdiff |
| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
tree | commitdiff |
| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
tree | commitdiff |
| 2017-01-26 |
gmungoc | JAL-2360 corrected comment |
tree | commitdiff |
| 2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure inter... |
tree | commitdiff |
| 2017-01-06 |
gmungoc | JAL-2371 slight simplification of findColour overrides |
tree | commitdiff |
| 2017-01-06 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
| 2017-01-06 |
gmungoc | JAL-2360 findColour() with no args removed from ColourS... |
tree | commitdiff |
| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
| 2016-12-29 |
gmungoc | JAL-2630 first pass groovy colour scheme (with slight... |
tree | commitdiff |
| 2016-12-23 |
gmungoc | JAL-2360 removed UserDefinedColours.userColourSchemes |
tree | commitdiff |
| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-2360 comment only |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-2360 tidy up, simplify isApplicableTo test |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-2360 no RNAHelices colouring for groups |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-2361 Blosum is enabled for peptide |
tree | commitdiff |
| 2016-12-21 |
gmungoc | JAL-1421 add types to Map |
tree | commitdiff |
| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
tree | commitdiff |
| 2016-12-19 |
gmungoc | JAL-2360 amended toAppletParameter() for reproducible... |
tree | commitdiff |
| 2016-12-16 |
gmungoc | JAL-2360 added UserColourScheme.toAppletParameter+test... |
tree | commitdiff |
| 2016-12-16 |
gmungoc | JAL-2360 getColour() renamed to getColourScheme(),... |
tree | commitdiff |
| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
tree | commitdiff |
| 2016-12-13 |
gmungoc | JAL-2365 test for lightgray, darkgray not lightGray... |
tree | commitdiff |
| 2016-12-13 |
gmungoc | JAL-2360 code formatting only and if-else changed to... |
tree | commitdiff |
| 2016-12-12 |
gmungoc | JAL-2362 return correct lower-case colour; Javadoc... |
tree | commitdiff |
| 2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
tree | commitdiff |
| 2016-11-08 |
gmungoc | JAL-2301 made T hydrophobic as per the cited conservati... |
tree | commitdiff |
| 2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
tree | commitdiff |
| 2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
tree | commitdiff |
| 2016-11-01 |
gmungoc | JAL-98 use Integer constants; tests added for propHash... |
tree | commitdiff |
| 2016-10-27 |
gmungoc | JAL-98 refactor bleachColour() to ColorUtils |
tree | commitdiff |
| 2016-10-26 |
gmungoc | JAL-2286 modal residue check + commenting |
tree | commitdiff |
| 2016-10-26 |
gmungoc | JAL-2286 javadoc, refactor, unit tests for threshold... |
tree | commitdiff |
| 2016-10-25 |
gmungoc | JAL-2286 use constant for fixed colours |
tree | commitdiff |
| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
| 2016-10-25 |
gmungoc | JAL-98 field comments updated |
tree | commitdiff |
| 2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 apply license |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 source formatting |
tree | commitdiff |
| 2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
tree | commitdiff |
| 2016-09-29 |
Jim Procter | JAL-2236 fix: bail if no context available for subgroup |
tree | commitdiff |
| 2016-09-22 |
gmungoc | JAL-1421 typed ResidueProperties.propHash; JAL-2176... |
tree | commitdiff |
| 2016-08-12 |
gmungoc | JAL-1841 bug fixes / code tidy for rna SS rendering... |
tree | commitdiff |
| 2016-06-22 |
gmungoc | JAL-2015 fixed bug in copy constructor and added tests |
tree | commitdiff |
| 2016-06-22 |
gmungoc | JAL-1982 defensive checks for null annotations array |
tree | commitdiff |
| 2016-05-10 |
gmungoc | Merge branch 'develop' into features/JAL-1956_featureStyles |
tree | commitdiff |
| 2016-03-15 |
gmungoc | JAL-2016 FeatureSettingsI now FeatureSettingsModelI |
tree | commitdiff |
| 2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
| 2016-02-25 |
gmungoc | JAL-2015 parse/write Jalview feature format pushed... |
tree | commitdiff |
| 2016-02-24 |
gmungoc | JAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles |
tree | commitdiff |
| 2016-02-22 |
gmungoc | JAL-1705 first pass at applying preset feature colourin... |
tree | commitdiff |
| 2016-02-20 |
gmungoc | Merge branch 'JAL-1956_featureStyles' into features... |
tree | commitdiff |
| 2016-02-20 |
gmungoc | JAL-2016 first draft of pre-set feature colour scheme |
tree | commitdiff |
| 2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2016-01-21 |
tcofoegbu | JAL-1479 JAL-1979 updated the modified-aminoacid triple... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-1421 parameterised map constructor used |
tree | commitdiff |
| 2015-11-21 |
gmungoc | JAL-653 JAL-1968 FeaturesFile now handles Jalview or... |
tree | commitdiff |
| 2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
tree | commitdiff |
| 2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
tree | commitdiff |
| 2015-10-08 |
Jim Procter | Merge branch 'develop' into Release_2_9_0b1_Branch |
tree | commitdiff |
| 2015-09-30 |
tcofoegbu | JAL-1912 added support of tcoffee annotation and other... |
tree | commitdiff |
| 2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
tree | commitdiff |
| 2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
tree | commitdiff |
| 2015-09-07 |
gmungoc | JAL-1636 translate stop codon as '*', mouseover * as... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1871 choose a new RNA Helices palette when annotati... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1871 don’t change the palette every time an edit... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1871 reinstate random generation of palette when... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1869 make per-sequence RNA helix colours each time... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1233 tidy up and use same RNA helix colours in... |
tree | commitdiff |
| 2015-09-05 |
Jim Procter | JAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... |
tree | commitdiff |
| 2015-09-03 |
Jim Procter | JAL-1680 JAL-1576 JAL-1233 all conservation and consens... |
tree | commitdiff |
| 2015-09-03 |
Jim Procter | JAL-1576 fix: trigger broadcast of colour change with... |
tree | commitdiff |
| 2015-09-03 |
Jim Procter | JAL-1550 JAL-1551 formatting |
tree | commitdiff |
| 2015-09-03 |
Jim Procter | JAL-1233 JAL-1576 copy constructor to propagate helix... |
tree | commitdiff |
| 2015-09-03 |
gmungoc | JAL-1828 lookup table to convert MSE to MET when parsin... |
tree | commitdiff |
| 2015-07-23 |
Jim Procter | JAL-1819 use Float.isNaN() to check for NaNs! |
tree | commitdiff |
| 2015-05-20 |
gmungoc | JAL-1741 nucleotide-aware colour schemes applied to... |
tree | commitdiff |
| 2015-03-26 |
gmungoc | Merge develop to Release_2_8_3_Branch |
tree | commitdiff |
| 2015-03-06 |
Jim Procter | JAL-1683 replace year/version strings with tokens in... |
tree | commitdiff |
| 2015-03-06 |
Jim Procter | Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... |
tree | commitdiff |
| 2015-01-07 |
Jim Procter | Merge branch 'develop' into JAL-1483_29dev |
tree | commitdiff |
| 2015-01-07 |
Jim Procter | JAL-1483 register feature similarity model |
tree | commitdiff |
| 2014-12-22 |
Jim Procter | Merge: 497958b 68dcaa7 |
tree | commitdiff |
| 2014-12-15 |
Jim Procter | JAL-1620 version bump and release notes |
tree | commitdiff |
| 2014-12-05 |
gmungoc | Merge branch 'Release_2_8_2_Branch' of local repository... |
tree | commitdiff |
| 2014-12-03 |
gmungoc | JAL-1609 wip on Chimera colour by sequence |
tree | commitdiff |
| 2014-12-01 |
Jim Procter | JAL-795 hack to ignore black colour in annotation element. |
tree | commitdiff |
| 2014-11-24 |
Jim Procter | JAL-1593 refactor rna helix colours to static singleton... |
tree | commitdiff |
| 2014-11-23 |
Jim Procter | JAL-1593 allow per-sequence shading of RNA helix (store... |
tree | commitdiff |
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git://source.jalview.org / jalview.git / history