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Merge branch 'bug/JAL-1923_290b2_group_annots' into develop
[jalview.git] / src / jalview / structure /
2015-09-16 gmungocJAL-1859 debug logging removed tree | commitdiff
2015-09-16 gmungocJAL-1859 temporary debug output tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from... tree | commitdiff
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... tree | commitdiff
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ... tree | commitdiff
2015-06-22 gmungocJAL-892 tidy Varna panel names; JAL-1789 simplified... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-05 gmungocJAL-1622 code tidy only, no functional change tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-05-06 gmungocJAL-1725 broadcast empty selection (to clear selection) features/JAL-1725chimeraListener tree | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-11-27 Jim ProcterJAL-674 unused variable tree | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... tree | commitdiff
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface tree | commitdiff
2014-11-13 gmungocmerge tree | commitdiff
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface tree | commitdiff
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build tree | commitdiff
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 javadoc tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-08-27 Jim ProcterJAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22... tree | commitdiff
2013-07-07 Jim ProcterJAL-1332 make SSM context discovery safer (particularly... tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-03-02 jprocter(JAL-842) todo tree | commitdiff
2012-03-02 jprocterremove unnecessary method tree | commitdiff
2012-03-02 jprocterefficiency, and ensure mouseover messages originating... tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-08-03 jprocterfix NPE when applets stop. seems to make the simple... tree | commitdiff
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence... tree | commitdiff
2011-07-05 jprocterignore any events after manager has already been finalized. tree | commitdiff
2011-07-05 jprocterrefactor to send list of model filenames involved in... tree | commitdiff
2011-06-23 jprocterpatch for JAL-846 made targetChain mapping constraint... tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-05-17 jprocterinterface for handlers of alignmentViewPanel events tree | commitdiff
2011-05-05 jprocteradded simple stdout debug function tree | commitdiff
2011-02-18 jproctercall to release any explicit event handler references... tree | commitdiff
2011-02-18 jproctercall to release any explicit event handler references tree | commitdiff
2011-02-14 jprocterjavadoc tree | commitdiff
2011-01-18 jprocteravoid creating lots of identical search results. patch... tree | commitdiff
2011-01-18 jprocterrefactored VamsasListener to allow the source of the... tree | commitdiff
2011-01-12 jprocterjavadoc tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-08-31 jprocterfixed various null pointer exceptions that occur when... tree | commitdiff
2010-08-27 jprocterpatch re issues.jalview.org/browse/JAL-583 : hack to... tree | commitdiff
2010-08-20 jproctercheck that we have mappings before trying to broadcast... tree | commitdiff
2010-06-29 jprocterupgrading structure/sequence binding so that a structur... tree | commitdiff
2010-06-11 jprocterpatch for JAL-556 - more robust mapping of sequence... tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2008-11-12 jprocterjdk1.2 compatibility tree | commitdiff
2008-11-12 jprocterjavadoc tree | commitdiff
2008-11-12 jprocternew listener/sender for selection events tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-03-08 jprocterfirst hack to get true DNA and Sequence highlighting... tree | commitdiff
2007-11-12 jprocterjavadoc tree | commitdiff
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas... tree | commitdiff
2007-06-17 jprocterenable mouseover between DNA coding regions and transla... tree | commitdiff
2007-05-15 amwaterhouseSequenceListener highlights SearchResults, not just... tree | commitdiff
2007-05-04 amwaterhouseremove system.out tree | commitdiff
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used... tree | commitdiff
2007-04-27 amwaterhouseColourByStructure not ready yet tree | commitdiff
2007-04-25 jproctertransfer of residue numbering as alignment annotation tree | commitdiff
2007-04-23 amwaterhousegetColour added to structures tree | commitdiff
2007-04-13 amwaterhouseCheck alignment has same sequence tree | commitdiff
2007-03-26 jprocterPDB residue numberings transfered and alignment view... tree | commitdiff
2007-02-27 amwaterhouseStructure listener tree | commitdiff