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[jalview.git] / src / jalview / util / MapList.java

2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-01-26	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2021-10-01	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 more consistent parameter naming	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 helper method reinstated to avoid code duplication	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 locateInFrom/To revised with tests; unused...	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 debugged and working (but not tidied) locateIn...	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 locateInFrom2 work in progress commit	blob \| commitdiff \| diff to current
2021-09-15	gmungoc	JAL-3761 failing test, formatting, method renamed	blob \| commitdiff \| diff to current
2021-09-15	gmungoc	JAL-3751 only merge strictly contiguous ranges of mappings	blob \| commitdiff \| diff to current
2020-10-28	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2020-10-22	gmungoc	JAL-3751 only merge strictly contiguous ranges of mappings	blob \| commitdiff \| diff to current
2020-10-22	gmungoc	JAL-3751 only merge strictly contiguous ranges of mappings	blob \| commitdiff \| diff to current
2019-06-11	gmungoc	JAL-3187 CDS has same dataset sequence as transcript	blob \| commitdiff \| diff to current
2018-06-04	gmungoc	JAL-3019 correctly form toRange of 'traversed' MapList	blob \| commitdiff \| diff to current
2018-05-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' into...	blob \| commitdiff \| diff to current
2018-04-12	gmungoc	JAL-2223 don't add duplicate mappings to StructureSelec...	blob \| commitdiff \| diff to current
2017-12-01	gmungoc	JAL-2835 spike updated to latest (use specific SO term...	blob \| commitdiff \| diff to current
2017-11-28	gmungoc	JAL-2850 MapList.isToForwardStrand added	blob \| commitdiff \| diff to current
2017-10-05	gmungoc	JAL-2738 update spikes/mungo	blob \| commitdiff \| diff to current
2017-10-05	gmungoc	JAL-2738 method to compound / traverse / convolve two...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-09	Jim Procter	JAL-2154 test for CDS->protein map	blob \| commitdiff \| diff to current
2016-08-04	Jim Procter	JAL-2154 test for CDS->protein map	blob \| commitdiff \| diff to current
2016-06-14	gmungoc	JAL-1686 JAL-2110 equals and/or hashCode method added	blob \| commitdiff \| diff to current
2016-06-09	gmungoc	JAL-2110 work in progress	blob \| commitdiff \| diff to current
2016-04-01	gmungoc	JAL-1705 tweak to MapList.toString for debugging	blob \| commitdiff \| diff to current
2016-03-11	gmungoc	JAL-1705 javadoc added only	blob \| commitdiff \| diff to current
2016-03-01	gmungoc	JAL-1705 align CDS and peptide products to transcripts	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	JAL-1705 merge contiguous ranges when constructing...	blob \| commitdiff \| diff to current
2016-01-21	gmungoc	JAL-1705 isFromForwardStrand added; toString (for debug...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 AlignedCodonFrame internal refactor, merge...	blob \| commitdiff \| diff to current
2015-11-30	gmungoc	JAL-653 MapList constructor merges any contiguous ranges	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	toString method added to aid viewing in the debugger	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-19	jprocter	new coverage comparison - no test case in main method yet	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-11-30	jprocter	bugfixed MapList (must be propagated to vamsas version...	blob \| commitdiff \| diff to current
2007-07-13	jprocter	bugfix and comments	blob \| commitdiff \| diff to current
2007-05-02	jprocter	fixed getIntervals bug to ensure it returns range from...	blob \| commitdiff \| diff to current
2007-04-25	jprocter	moving word methods to MapList and begin bug-fix for...	blob \| commitdiff \| diff to current
2007-04-17	jprocter	proper copy constructor (not clone)	blob \| commitdiff \| diff to current
2007-04-02	amwaterhouse	addElement	blob \| commitdiff \| diff to current
2007-03-23	jprocter	removed Iterator usage.	blob \| commitdiff \| diff to current
2007-03-19	jprocter	mapping implemented by MapList added to DBRefEntry.	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-25	jprocter	checks for irreflexive mapping in main tester	blob \| commitdiff \| diff to current
2007-01-24	jprocter	kkv change	blob \| commitdiff \| diff to current
2007-01-24	jprocter	Map arbitrary series of non-overlapping integer interva...	blob \| commitdiff \| diff to current

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