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JAL-2171 matching bracket default character for rna SS entry
[jalview.git] / src / jalview / util /
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi... tree | commitdiff
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user... tree | commitdiff
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-09 gmungocJAL-2114 corrected Javadoc tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format tree | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef tree | commitdiff
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests tree | commitdiff
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors tree | commitdiff
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue tree | commitdiff
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score... tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging tree | commitdiff
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... tree | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings tree | commitdiff
2016-03-11 gmungocJAL-1705 javadoc added only tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id... tree | commitdiff
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon tree | commitdiff
2016-02-12 gmungocMerge branch 'develop' into tree | commitdiff
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... tree | commitdiff
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by tree | commitdiff
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing... tree | commitdiff
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug... tree | commitdiff
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy tree | commitdiff
2016-01-11 gmungocJAL-1989 map hidden column ranges tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge... tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mappings also tree | commitdiff
2015-12-02 gmungocJAL-1827 added overloaded method for convenience tree | commitdiff
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 add licensing tree | commitdiff
2015-09-24 gmungocJAL-1905 parse url including & correctly tree | commitdiff
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created... tree | commitdiff
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame... tree | commitdiff
2015-07-01 gmungocJAL-1799 deduct more space for decorators on Windows tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 refactored code for dbsource reggae validator... tree | commitdiff
2015-06-04 gmungoctoString method added to aid viewing in the debugger tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... tree | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... tree | commitdiff
2015-04-23 gmungocJAL-845 only 'follow' sort command in coding complement... tree | commitdiff
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... tree | commitdiff
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... tree | commitdiff
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop) tree | commitdiff
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-03-02 Charles Ofoegbuhouse keeping tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now... tree | commitdiff
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi... tree | commitdiff
2014-11-12 Charles Ofoegbuhouse-keeping tree | commitdiff
2014-11-12 Charles OfoegbuAdded support for SVG Export tree | commitdiff
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... tree | commitdiff
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_... tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-18 gmungocJAL-1360 Javadoc/JUnit tree | commitdiff
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 tree | commitdiff
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into develop tree | commitdiff
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