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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
util
/
2015-06-04
gmungoc
toString method added to aid viewing in the debugger
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-11-25
Charles Ofoegbu
JAL-1469 Added SVGOptions.java for lineart/text renderi...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
house-keeping
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-10-06
Jim Procter
JAL-1500 JAL-1265 patch to parse PDB database refs...
tree
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commitdiff
2014-10-03
Jim Procter
Merge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 Javadoc/JUnit
tree
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commitdiff
2014-09-18
gmungoc
JAL-1360 refactored utility method to ColorUtils class
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-04-23
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1383 scrubbed envision GUI and documentation
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1485
tree
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commitdiff
2014-02-21
Jim Procter
Merge branch 'pathc_JAL-1354' into develop
tree
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commitdiff
2014-02-21
Jim Procter
JAL-1354 use real var-args method signature to avoid...
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-12-25
darolmar
JAL-1355 (basic i18n support)
tree
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commitdiff
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
tree
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commitdiff
2013-10-11
Jim Procter
JAL-1354 watch for exceptions when initialising (Securi...
tree
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commitdiff
2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
tree
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commitdiff
2012-11-17
jprocter
store chaincode on pdbentry
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-08-28
jprocter
JAL-1149 patch
tree
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
tree
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commitdiff
2011-12-08
jprocter
simple escape utility class for JAL-1023 patch
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
tree
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commitdiff
2011-07-25
janengelhardt
Start merging of Laurens Code
tree
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commitdiff
2011-05-30
jprocter
first patch for JAL-838 - allow new typed of PID calcs
tree
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commitdiff
2010-09-23
jprocter
apply jalview code style
tree
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
tree
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commitdiff
2010-09-10
jprocter
early bail out for long urls, and threaded off group...
tree
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commitdiff
2010-09-09
jprocter
wrap tooltips and revise layout (JAL-644)
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2010-04-02
jprocter
cli length limit
tree
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commitdiff
2010-04-02
jprocter
urllength limit and more efficient url construction
tree
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commitdiff
2010-03-26
jprocter
sync for cvs wierdness
tree
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commitdiff
2010-03-26
jprocter
sync for cvs wierdness
tree
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commitdiff
2010-02-09
jprocter
token replacement engine for generation of urls for...
tree
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commitdiff
2010-02-09
jprocter
qsort objects on integers
tree
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commitdiff
2009-07-24
jprocter
headless test
tree
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commitdiff
2009-06-19
jprocter
debug comments
tree
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commitdiff
2009-06-19
jprocter
new coverage comparison - no test case in main method yet
tree
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commitdiff
2009-06-12
jprocter
javadoc
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
tree
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commitdiff
2009-02-24
jprocter
allow label to be set independently of parsed input...
tree
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commitdiff
2008-11-12
jprocter
jar inputstream provider enabling multiple jar entries...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-08-11
jprocter
regular expression based URL link generation
tree
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commitdiff
2008-08-01
jprocter
todo
tree
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commitdiff
2007-11-30
jprocter
bugfixed MapList (must be propagated to vamsas version...
tree
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commitdiff
2007-10-26
jprocter
new applet and application utility class for platform...
tree
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commitdiff
2007-10-24
jprocter
add parsed PDB reference to sequences
tree
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commitdiff
2007-09-29
jprocter
javadoc
tree
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commitdiff
2007-09-07
jprocter
added a more general DBRef search interface
tree
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commitdiff
2007-07-25
jprocter
uniprot synonym
tree
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commitdiff
2007-07-13
jprocter
new search method for finding references like other...
tree
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commitdiff
2007-07-13
jprocter
bugfix and comments
tree
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commitdiff
2007-06-18
jprocter
1.1 methods
tree
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commitdiff
2007-05-02
jprocter
fixed getIntervals bug to ensure it returns range from...
tree
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commitdiff
2007-04-30
jprocter
javadoc
tree
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commitdiff
2007-04-26
jprocter
double sort functions
tree
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commitdiff
2007-04-25
jprocter
moving word methods to MapList and begin bug-fix for...
tree
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commitdiff
2007-04-17
jprocter
proper copy constructor (not clone)
tree
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commitdiff
2007-04-02
amwaterhouse
addElement
tree
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commitdiff
2007-03-23
jprocter
removed Iterator usage.
tree
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commitdiff
2007-03-19
jprocter
New method for mapping from common database sources...
tree
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commitdiff
2007-03-19
jprocter
mapping implemented by MapList added to DBRefEntry.
tree
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commitdiff
2007-02-07
amwaterhouse
Formatting
tree
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commitdiff
2007-01-25
jprocter
checks for irreflexive mapping in main tester
tree
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commitdiff
2007-01-24
jprocter
kkv change
tree
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commitdiff
2007-01-24
jprocter
Map arbitrary series of non-overlapping integer interva...
tree
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commitdiff
2006-12-21
amwaterhouse
remove unnecessary import
tree
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commitdiff
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