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JAL-3821 ported to refactored FlatFile parser
[jalview.git] / src / jalview / ws / dbsources /
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... tree | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 tcofoegburesolve conflict with Mungo's merge tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support tree | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings tree | commitdiff
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation tree | commitdiff
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop tree | commitdiff
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... tree | commitdiff
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-12 gmungocJAL-1270 remove trailing space + test tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc... tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-01 tcofoegbuhouse keeping tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... tree | commitdiff
2015-05-01 tcofoegbuJAL-1700 Improved the error handling mechanism for... tree | commitdiff
2015-05-01 tcofoegbuJAL-1726 Added external integration test for PDB Rest API tree | commitdiff
2015-04-17 tcofoegbuJAL-1698 bug fix to enable addition of a single structu... bug/JAL-1698_Append-Structures tree | commitdiff
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... tree | commitdiff
2015-03-27 tcofoegbumerge commit tree | commitdiff
2015-03-26 tcofoegbuJAL-1667 updated parseJsonExceptionString method in... features/JAL-1667_PDBe_Search_API tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-19 tcofoegbuJAL-1668 finally clean up tree | commitdiff
2015-03-18 Charles OfoegbuJAL-1668 house keeping tree | commitdiff
2015-03-18 Charles OfoegbuJAL-1668 added PDBDocFieldPreference for configuring... tree | commitdiff
2015-03-15 Charles OfoegbuJAL-1667 updated test and internationalization messages tree | commitdiff
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Charles OfoegbuJAL-1667 refactoring to support JAL-1668 tree | commitdiff
2015-03-04 Charles OfoegbuJAL-1668 First version JAL-1668 tree | commitdiff
2015-03-02 Charles Ofoegbuhouse keeping tree | commitdiff
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into develop tree | commitdiff
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin... tree | commitdiff
2013-06-18 Jim ProcterJAL-674 - avoid java.util.ConcurrentModificationExcepti... tree | commitdiff
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into develop tree | commitdiff
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary... tree | commitdiff
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source... tree | commitdiff
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved... tree | commitdiff
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen... tree | commitdiff
2012-05-14 jprocterJAL-1095 - todo tree | commitdiff
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre... tree | commitdiff
2012-05-11 jprocterformatting tree | commitdiff
2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs tree | commitdiff
2012-05-11 jprocterJAL-972 local do not have a coordsys element with sourc... tree | commitdiff
2012-05-11 jprocterJAL-424 TODO: new method signature for local source... tree | commitdiff
2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around... tree | commitdiff
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