2020-06-30 |
gmungoc | JAL-3446 unused imports removed |
tree | commitdiff |
2020-06-01 |
BobHanson | JAL-3626 Regex optimization from JAL-3253-applet; also... |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-01-17 |
Jim Procter | JAL-3116 clear out whitespace when materialising Sequen... |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-11-08 |
gmungoc | JAL-3116 better unmarshalling of EMBL/Uniprot XML |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB |
tree | commitdiff |
2018-09-14 |
gmungoc | JAL-3116 parse EMBL XML with JAXB (todo: update unit... |
tree | commitdiff |
2018-09-13 |
gmungoc | JAL-3116 Uniprot XML unmarshalled using JAXB not Castor |
tree | commitdiff |
2018-09-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_Branch |
tree | commitdiff |
2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
tree | commitdiff |
2018-06-27 |
hansonr | JAL-3032 just the changes pulled already |
tree | commitdiff |
2018-06-26 |
Jim Procter | JAL-3035 - jalview-das is no more ! |
tree | commitdiff |
2018-06-07 |
gmungoc | JAL-2920 wrap description in <html/> if it includes... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 revised TODO for JAL-3025 bug/JAL-2920_uniprotvariantfeature |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 don’t output variant/original sequence as... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-1920 JAL-3017 use newline not <br/> in description... |
tree | commitdiff |
2018-06-04 |
Jim Procter | JAL-3017 parse multiple variant elements for uniprot... |
tree | commitdiff |
2018-05-21 |
gmungoc | JAL-2920 use HGVS notation for protein variant feature |
tree | commitdiff |
2018-03-08 |
gmungoc | JAL-2885 tests updated for code changes |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 xfam https features/JAL-2885UniprotHttps |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 XFAM_DOMAIN->XFAM_BASEURL |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 renamed base URL getter from getDomain.. |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
tree | commitdiff |
2017-11-13 |
Jim Procter | JAL-2758 remove configurable behaviour - Uniprot sequen... |
tree | commitdiff |
2017-11-13 |
Jim Procter | JAL-2758 typo |
tree | commitdiff |
2017-10-06 |
Jim Procter | JAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2748 formatting |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2745 JAL-2748 direct download of XML from uniprot.org |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2748 formatting |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2745 JAL-2748 direct download of XML from uniprot.org |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'documentation/JAL-2675_release2102b1... |
tree | commitdiff |
2017-08-22 |
Jim Procter | JAL-1551 formatting |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-08-10 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2426 Rfam download suffix |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2426 JAL-1270 report Xfam download URL used if... |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2425 raw stockholm download URLs |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2425 remove overloaded getSequenceRecords method... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set SequenceFeature group in constructor |
tree | commitdiff |
2017-03-22 |
kiramt | JAL-2461 Removed DAS error stack trace, updated message |
tree | commitdiff |
2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor... |
tree | commitdiff |
2016-11-29 |
gmungoc | JAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
tree | commitdiff |
2016-10-14 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-06 |
gmungoc | JAL-2254 map error text in root node of EMBL XML response |
tree | commitdiff |
2016-10-06 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-06 |
gmungoc | JAL-2245 checks for null added (in case EMBL fetch... |
tree | commitdiff |
2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 source formatting |
tree | commitdiff |
2016-10-05 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-05 |
Jim Procter | Revert "JAL-2245 Castor mapping and code changes for... |
tree | commitdiff |
2016-10-04 |
gmungoc | Merge branch 'bug/JAL-2245enaXmlChange' into develop |
tree | commitdiff |
2016-10-04 |
gmungoc | JAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 use addDBRef to ensure normalisation (just... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 need to add both transcript and product, and... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 JAL-2232 remove version number from ENACDS... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 remove ENSEMBL from protein DB list: |
tree | commitdiff |
2016-10-01 |
Jim Procter | Merge branch 'develop' into bug/JAL-2210_ensembl_unipro... |
tree | commitdiff |
2016-09-29 |
gmungoc | JAL-2213 code warnings addressed (typed collections... |
tree | commitdiff |
2016-09-28 |
Jim Procter | JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot... |
tree | commitdiff |
2016-09-07 |
Jim Procter | JAL-282 TODO - Sequence name from PDB had redundant... |
tree | commitdiff |
2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
tree | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
tree | commitdiff |
2016-07-26 |
tcofoegbu | JAL-2157 bugfix for issues from enum refactoring |
tree | commitdiff |
2016-07-21 |
Jim Procter | Merge branch 'apifix/JAL-1926_JAL-2106' into develop |
tree | commitdiff |
2016-07-20 |
Jim Procter | JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA... |
tree | commitdiff |
2016-07-19 |
tcofoegbu | JAL-1919 set default structure file format to mmCIF... |
tree | commitdiff |
2016-07-12 |
gmungoc | FileFormat enum wip changes |
tree | commitdiff |
2016-07-11 |
gmungoc | file format enum wip changes |
tree | commitdiff |
2016-07-08 |
tcofoegbu | JAL-1919 Fixed failing tests, enabled HETATM processing... |
tree | commitdiff |
2016-06-30 |
tcofoegbu | JAL-1919 updated PDBSequenceFetcherTest and JMol parser... |
tree | commitdiff |
2016-06-20 |
gmungoc | JAL-1667 updated PDB example query to a valid id (witho... |
tree | commitdiff |
2016-05-31 |
Jim Procter | Merge branch 'develop' into features/JAL-2113_emblXml1.2 |
tree | commitdiff |
2016-05-27 |
gmungoc | JAL-1911 correct typo in field name |
tree | commitdiff |
2016-05-26 |
tcofoegbu | JAL-1911 bugfix - do not save i18n text in preference... |
tree | commitdiff |
2016-05-23 |
gmungoc | JAL-2113 EBIFetchClient refactor / unit tests / remove... |
tree | commitdiff |
2016-05-20 |
gmungoc | JAL-2113 embl_mapping.xml and code updated for EMBL... |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2079 fix broken cherry-pick conflict merge |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2079 use new service to retrieve Rfam Seed alignment |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2079 update URL for RFAM and PFAM sources |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2079 allow prefix+<XFAMID>+suffix type URL signature |
tree | commitdiff |
2016-04-19 |
tcofoegbu | JAL-2071 architectural improvement for Plugable Free... |
tree | commitdiff |
2016-03-24 |
tcofoegbu | JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB |
tree | commitdiff |
2016-03-23 |
tcofoegbu | JAL-2009 added programmatic custom feature setting... |
tree | commitdiff |
2016-03-22 |
tcofoegbu | resolve conflict with Mungo's merge |
tree | commitdiff |
2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
tree | commitdiff |
2016-03-21 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
next |