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JAL-4159 connectivity should be computed for the sequences analysed with PAsiMap...
[jalview.git]
/
src
/
jalview
/
ws
/
jws2
/
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-16
Ben Soares
JAL-3739 (combined) commits from feature/JAL-3739_useFo...
tree
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commitdiff
2020-09-16
Jim Procter
JAL-3748 recover complement alignment from complement...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
tree
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-07-10
gmungoc
JAL-3048 code reordered for JalviewJS compliance
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2790 provide a cancel button for JABAWS and AACon...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-01
gmungoc
JAL-2488 remove finalize methods
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 choose appropriate alphabet for filtering...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 filterNonStandardResidues configurable for...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 flag and filter to exclude non-standard amino...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-29
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-23
Jim Procter
JAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-23
kiramt
JAL-2314 Tweaks to stop thread sync issues
tree
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commitdiff
2017-03-23
kiramt
JAL-2314 Tidies
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
tree
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commitdiff
2016-05-12
gmungoc
JAL-2104 format tooltips to wrap correctly
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-04-26
gmungoc
JAL-2068 deleting user-defined annotation removes the...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 redundant implements clauses removed
tree
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commitdiff
2016-02-24
gmungoc
JAL-2015 JAL-1956 rollout of FeatureColourI in place of
JAL-1956_featureStyles
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-06
Jim Procter
JAL-1645 JAL-1355 UI/i18n: added missing messages,...
tree
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commitdiff
2015-09-01
gmungoc
JAL-1355 user error message text externalised
tree
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commitdiff
2015-08-27
gmungoc
JAL-1544 message label corrected
tree
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commitdiff
2015-07-23
Jim Procter
Merge branch 'features/JAL-1759jmolUpdate' into develop
tree
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commitdiff
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
tree
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commitdiff
2015-06-26
gmungoc
Merge branch 'develop' into features/JAL-1759jmolUpdate
tree
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commitdiff
2015-06-26
gmungoc
JAL-1759 updates for Jmol 14.2.14_25.06.11
tree
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commitdiff
2015-06-25
Jim Procter
JAL-1691 avoid NPE when original split frame has been...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-01
Jim Procter
JAL-1601 ignore the JABA Jpred client in Jalview 2...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 back out original fix and simply check MSAWSTh...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 formatting
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 new validInput flag set according to validity...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting/tidy
tree
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commitdiff
2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
tree
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1583_MSA_webservice_validation...
tree
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1583_MSA_webservice_validation...
tree
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commitdiff
2014-11-27
Charles Ofoegbu
modified regex for sequence validation
tree
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commitdiff
2014-11-19
Charles Ofoegbu
JAL-1583 MSA webservice validation
tree
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commitdiff
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
tree
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commitdiff
2014-11-19
Charles Ofoegbu
merge commit
tree
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commitdiff
2014-11-18
gmungoc
JAL-1582 removing finalize() as may have unexpected...
tree
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commitdiff
2014-11-18
Charles Ofoegbu
JAL-1583 MSA webservice client side validation
tree
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commitdiff
2014-11-18
gmungoc
JAL-1582 quicker tooltip on service presets (and code...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into Release_2_...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Undo changes to JabaWsServerQuery.java
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Undo changes to JabaWsServerQuery.java
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 propagate results of JABA sequence based predi...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
JAL-1043 patch to show warning dialog when webservice...
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-10-03
Jim Procter
JAL-1355 removed all top level html tags from message...
tree
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commitdiff
2014-09-26
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
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