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Merge branch 'develop' of http://source.jalview.org/git/jalview into develop
[jalview.git] / test / jalview / analysis /
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!) tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 format tests tree | commitdiff
2016-10-04 gmungocJAL-2232 some fix / partial fix of failing tests bug/JAL-2210_hack_for_Release_2_10 tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 first pass at attempting to fix CrossRef tests... tree | commitdiff
2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to tree | commitdiff
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing tree | commitdiff
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB... tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ... tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 JAL-2154 fix test for additional reference... tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'trailm' into trial_fixMakeCDSDBRefPropagation tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 FIXME for test failure tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-08-23 Jim ProcterJAL-2154 updated testMakeCDSAlignment for expected... tree | commitdiff
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test tree | commitdiff
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection tree | commitdiff
2016-08-17 gmungocJAL-2172 handle case where column selection is not... tree | commitdiff
2016-08-16 gmungocJAL-2171 matching bracket default character for rna... tree | commitdiff
2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to... tree | commitdiff
2016-08-04 Jim ProcterJAL-2110 comment on failing test (consider skipping... tree | commitdiff
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences tree | commitdiff
2016-07-18 gmungocfileFormat enum wip changes tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 note about use case for when alignAsSameSequen... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 test demonstrating limitation of current imple... tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-07 gmungocJAL-2110 added alignAsSameSequences to handle 'direct... tree | commitdiff
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds tree | commitdiff
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when... tree | commitdiff
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying... tree | commitdiff
2016-07-04 gmungocJAL-2110 bug fix / test for searchDataset mappings... tree | commitdiff
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results... tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 JAL-1551 formatting tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix failing tests tree | commitdiff
2016-06-23 Jim ProcterJAL-2110 enable and fix test tree | commitdiff
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context... tree | commitdiff
2016-06-21 gmungocJAL-2110 updated unit test to match code changes tree | commitdiff
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment tree | commitdiff
2016-06-16 Jim ProcterJAL-2110 change test for desired behaviour of getCodonF... tree | commitdiff
2016-06-16 Jim ProcterJAL-2110 throw implementation error if not given a... tree | commitdiff
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use... tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher tree | commitdiff
2016-05-25 gmungocJAL-2110 wip CrossRefs rewrite of CrossRef tree | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef tree | commitdiff
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature... tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature... tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG... tree | commitdiff
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... tree | commitdiff
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer... tree | commitdiff
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug tree | commitdiff
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... tree | commitdiff
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... tree | commitdiff
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1270 unit test for SequenceIdMatcher.SeqIdName tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-03 gmungocJAL-1705 unit test for aligning with incomplete start... tree | commitdiff
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 fix for broken tests tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-21 gmungocJAL-1705 features transferred to CDS sequence; makeExon... tree | commitdiff
2016-01-05 gmungocJAL-653 updating 'align as' tests to match latest tweak... tree | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... tree | commitdiff
2015-08-17 gmungocJAL-1270 testIsMappable added tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation tree | commitdiff
2015-07-06 gmungocJAL-1081 unit tests added tree | commitdiff
2015-07-06 gmungocJAL-1782 refactored test to ensure it passes in TestNG tree | commitdiff
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