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JAL-4420 Tests for new FileUtils methods
[jalview.git]
/
test
/
jalview
/
ws
/
2023-11-20
James Procter
JAL-4343 patch for JAL-4347 uniprot non-pos feature...
tree
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commitdiff
2023-11-15
James Procter
JAL-4090 JAL-4334 position status when start, end or...
bug/JAL-4334_unknownstartenduniprotfeatures
tree
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commitdiff
2023-11-13
James Procter
JAL-4334 failing test using whole of Q29079 accession...
tree
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-629 changes merged in from develop fixed it. Delet...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-629 added data for test
tree
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commitdiff
2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
tree
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commitdiff
2023-02-27
Ben Soares
JAL-629 JAL-4124 JAL-3855 remove deleted debugging...
tree
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commitdiff
2023-02-24
James Procter
JAL-629 JAL-4124 JAL-3855 test to check we can import...
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-10
James Procter
JAL-3077 broken conflict resolve resulted in failing...
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 JAL-2144 ‘invalid’ DBRefEntry has a null versi...
patch/JAL-4119_sifts_ftp_split
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 use split_xml directories rather than the...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
tree
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commitdiff
2022-11-30
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-10-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
tree
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commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
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commitdiff
2022-10-11
Jim Procter
JAL-4073 update tests
tree
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commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2022-10-06
Jim Procter
JAL-4073 Pfam retrieval now works via a template includ...
tree
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commitdiff
2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-01-26
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-10-01
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
tree
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commitdiff
2021-08-18
Jim Procter
JAL-3855 JAL-2349 download PAE matrix along with alpha...
tree
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commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
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commitdiff
2020-10-28
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2020-08-05
gmungoc
JAL-3692 unit test updated for ?gzip download endpoint URL
patch/JAL-3692enaEndpointFlatfile
tree
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commitdiff
2020-08-05
gmungoc
JAL-3692 unit test updated for ?gzip download endpoint URL
feature/JAL-3692enaEndpoint
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 URL tests updated
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-07-28
Jim Procter
JAL-3615 update tests for Rfam/Pfam specific gzip endpoints
tree
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commitdiff
2020-07-28
Jim Procter
JAL-3615 update tests for Rfam/Pfam specific gzip endpoints
tree
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commitdiff
2020-07-23
gmungoc
JAL-3692 URL tests updated
tree
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commitdiff
2020-07-21
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2019-10-10
Ben Soares
JAL-3210 Two fixed tests (previously not compiling)
tree
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commitdiff
2019-10-10
Ben Soares
JAL-3210 Two fixed tests (previously not compiling)
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 test method renamed to match code
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-08-21
gmungoc
JAL-3032 MCview package renamed mc_view in test classes
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 format/comment tidy
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
gmungoc
JAL-2920 unit tests for 3 or more original or variant...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 basic test for Description from features with...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 scan all test IDs before testing and reporting...
bugs/JAL-2780_JAL-2781_pdbnegativenums
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 SequenceI.findFeatures takes column numbers...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 report exactly which residues do not receive...
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2780 JAL-2781 extra column in mapping array
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2780 use value of ’UNASSIGNED’ constant in assert...
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2904 replaced assert for (getEnd()-getStart()+1...
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-12-01
Jim Procter
Merge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-14
Jim Procter
JAL-2758 update uniprot retrieval test
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2780 JAL-2781 refactored PDB fetch network tests...
tree
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commitdiff
2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 JAL-2745 remove uniprot from EBI fetch client...
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 patch tests for https
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 JAL-2745 remove uniprot from EBI fetch client...
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 patch tests for https
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 test for alignment metadata retrieved from...
tree
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commitdiff
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