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jalview.git
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... commit | commitdiff | tree | snapshot
2015-01-18 Jim Procteralways use interface rather than field access commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29... commit | commitdiff | tree | snapshot
2015-01-09 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterJAL-1483 formatting commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence... commit | commitdiff | tree | snapshot
2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distan... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 source formatting commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 register feature similarity model commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 null features not displayed commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 organise imports commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry commit | commitdiff | tree | snapshot
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop commit | commitdiff | tree | snapshot
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling commit | commitdiff | tree | snapshot
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff | tree | snapshot
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... commit | commitdiff | tree | snapshot
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export commit | commitdiff | tree | snapshot
2014-12-14 Mungo CarstairsJAL-1596 set HTTP 1.1 in HttpClient commit | commitdiff | tree | snapshot
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched commit | commitdiff | tree | snapshot
2014-12-08 Charles Ofoegbumerge commit commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... commit | commitdiff | tree | snapshot
2014-12-05 Charles Ofoegbumodified html css commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuJAL-1605 merge commit commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuChange the Html export to utilize svg commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now... commit | commitdiff | tree | snapshot
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository... commit | commitdiff | tree | snapshot
2014-12-03 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 update applet authors list commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 updated library licensing info commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 release notes commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 typo commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 add missing jars to install commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating author list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating authors list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2... commit | commitdiff | tree | snapshot
2014-12-01 gmungocJAL-429 Phylip added to help page commit | commitdiff | tree | snapshot
2014-12-01 gmungocJAL-1544 typos/formatting in help (and Phylip added) commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... commit | commitdiff | tree | snapshot
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documen... commit | commitdiff | tree | snapshot
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting/tidy commit | commitdiff | tree | snapshot
2014-11-28 gmungocJAL-1596 first REST interface coded commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-1517 svg==scalable :) commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to... commit | commitdiff | tree | snapshot
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