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jalview.git
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... commit | commitdiff | tree | snapshot
2020-08-18 gmungocJAL-3692 parse multiline CDS location correctly commit | commitdiff | tree | snapshot
2020-08-18 Ben SoaresJAL-3676 Start of documentation in help pages logging... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 release notes for JAL-3691 commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 JAL-3561 documented in release notes commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 report JAL-3702 as known defect commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3712 fix typos for rebuilding/updating getdown... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 JAL-3597 release notes commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch... commit | commitdiff | tree | snapshot
2020-08-14 Ben SoaresJAL-3676 More explicit tooltip about resetting log... commit | commitdiff | tree | snapshot
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report... commit | commitdiff | tree | snapshot
2020-08-13 gmungocJAL-3597 slight tidying of code and Javadoc, passmark... commit | commitdiff | tree | snapshot
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... commit | commitdiff | tree | snapshot
2020-08-13 Jim ProcterJAL-3675 brought forward patch to build.gradle for... commit | commitdiff | tree | snapshot
2020-08-13 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... commit | commitdiff | tree | snapshot
2020-08-12 Jim ProcterJAL-3675 added JAL-3576 as known defect (colocated... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-08-11 gmungocJAL-3371 more fine-grained slider; set Param slider... commit | commitdiff | tree | snapshot
2020-08-10 gmungocJAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard... commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into... commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using... commit | commitdiff | tree | snapshot
2020-08-05 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692 commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 URL tests updated commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656 commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'bug/JAL-3541_cherry_pick_to_releases_Rele... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 ensure deletion of cloverReportDir commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 small fix for clover.xml location expected... commit | commitdiff | tree | snapshot
2020-07-07 soaresJAL-3541 added a property/variable style comment to... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Fixed report path for build artifacts commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Individual tests now instrumented and reported... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Helpers for running tests, and other commands... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 increase maxheapsize for test worker process commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 rejigged clover tasks very mildly commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3685 Fixed single quotes in formatMessage messages commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements commit | commitdiff | tree | snapshot
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