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JAL-3949 Complete new abstracted logging framework in jalview.log. Updated log calls...
[jalview.git] / src / jalview / analysis / PCA.java
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... blob | commitdiff
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details... blob | commitdiff | diff to current
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of... blob | commitdiff | diff to current
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... blob | commitdiff | diff to current
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional... blob | commitdiff | diff to current
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... blob | commitdiff | diff to current
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... blob | commitdiff | diff to current
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA blob | commitdiff | diff to current
2017-03-23 gmungocJAL-2397 scale PCA by PID to alignment width to match... blob | commitdiff | diff to current
2017-03-23 gmungocJAL-2393 code tidy and comments, PIDDistanceModel depre... blob | commitdiff | diff to current
2017-02-27 gmungocJAL-1632 add score model params to PCAModel and PCA... blob | commitdiff | diff to current
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters... blob | commitdiff | diff to current
2017-02-24 gmungocJAL-1403 preserve range of distance scores for similarity blob | commitdiff | diff to current
2017-02-24 gmungocJAL-2403 JAL-1483 push 'reverseRange' inside Matrix blob | commitdiff | diff to current
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... blob | commitdiff | diff to current
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices blob | commitdiff | diff to current
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... blob | commitdiff | diff to current
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... blob | commitdiff | diff to current
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... blob | commitdiff | diff to current
2017-02-07 gmungocJAL-2379 removed unused commented code blob | commitdiff | diff to current
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix blob | commitdiff | diff to current
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA... blob | commitdiff | diff to current
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory blob | commitdiff | diff to current
2017-01-26 gmungocJAL-2380 code tidy after review blob | commitdiff | diff to current
2017-01-17 gmungocJAL-2379 use SparseMatrix for encoded sequences, tidy... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... blob | commitdiff | diff to current
2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report... blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-06-15 jprocterformatting blob | commitdiff | diff to current
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace... blob | commitdiff | diff to current
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop blob | commitdiff | diff to current
2011-12-08 jprocter(JAL-1013) allow sequence type to be specified enabling... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-08-18 jprocteroutput the eigenvector matrix in full: JAL-616 blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-07-18 amwaterhouseTakes string[] instead of seq[] blob | commitdiff | diff to current
2005-09-23 amwaterhouseCapture output as details blob | commitdiff | diff to current
2005-09-08 amwaterhouseREmove unnecessary imports blob | commitdiff | diff to current
2005-06-30 amwaterhouseFormatting changes blob | commitdiff | diff to current
2005-06-08 amwaterhouseFormatted source blob | commitdiff | diff to current
2005-06-08 amwaterhouseGPL license added blob | commitdiff | diff to current
2005-05-25 jproctertidied up system.out messages and moved many to stderr. blob | commitdiff | diff to current
2005-01-12 jprocterrandom change 3 blob | commitdiff | diff to current
2005-01-12 jprocteranother dummy. blob | commitdiff | diff to current
2005-01-12 jprocterirrelevant comment. blob | commitdiff | diff to current
2004-11-02 amwaterhouseJalview Imported Sources start blob | commitdiff | diff to current