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[jalview.git] / src / jalview / api / AlignViewportI.java

2020-09-16	Jim Procter	JAL-3748 store an AlignmentView for the complement...	blob \| commitdiff
2019-12-09	gmungoc	JAL-3490 pull up getViewAsVisibleContigs to base class...	blob \| commitdiff \| diff to current
2019-06-24	Jim Procter	JAL-3330 mergeFeatureStyles - needs test coverage	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	JAL-3127 use AlignViewportI.addGroup() to add group...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	viewport flag to indicate when structure view needs...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-11	kiramt	JAL-2742 removed unused getViewAsCigars	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 null more fields in AlignmentViewport.dispose...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-03-31	gmungoc	JAL-2435 slightly more sensible behaviour changing...	blob \| commitdiff \| diff to current
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-21	Jim Procter	Merge branch 'features/JAL-2388OverviewWindow' into...	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2435 copy font changes across split screen	blob \| commitdiff \| diff to current
2017-03-01	gmungoc	Merge branch 'features/JAL-2295setChimeraAttributes...	blob \| commitdiff \| diff to current
2017-02-28	kiramt	JAL-2388 First move of endRes etc out of AlignmentViewp...	blob \| commitdiff \| diff to current
2017-02-09	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-02-09	kiramt	JAL-2388 Initial refactor of OverviewPanel	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2385 more tests/bug fixes mostly for gui.SliderPane...	blob \| commitdiff \| diff to current
2017-01-27	gmungoc	JAL-2371 CollectionColourScheme renamed ResidueShader...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-01	Jim Procter	JAL-1933 basic hack to get gap counts shown as an annot...	blob \| commitdiff \| diff to current
2016-11-22	Jim Procter	Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...	blob \| commitdiff \| diff to current
2016-11-17	gmungoc	JAL-98 ProfilesI container for profiles for columns	blob \| commitdiff \| diff to current
2016-11-02	gmungoc	JAL-98 ProfileI interface for Profile	blob \| commitdiff \| diff to current
2016-11-02	gmungoc	JAL-98 Profile and ResidueCount moved from analysis...	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	gmungoc	Merge branch 'develop' into bug/JAL-98consensusMemory	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-10-03	gmungoc	JAL-98 use Profile to store consensus, ResidueCount...	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 new dispose() method to null references	blob \| commitdiff \| diff to current
2016-09-19	gmungoc	JAL-2172 test and code updates for readonly selection...	blob \| commitdiff \| diff to current
2016-08-31	Jim Procter	JAL-2034 moved ‘isDefinedGroup’ flag to a test method...	blob \| commitdiff \| diff to current
2016-06-02	tcofoegbu	JAL-1944 java doc update and minor house keeping	blob \| commitdiff \| diff to current
2016-06-01	tcofoegbu	JAL-1944 updated bugfix implementation	blob \| commitdiff \| diff to current
2016-05-31	tcofoegbu	JAL-1944 fix for visible seqs sometimes been replaced...	blob \| commitdiff \| diff to current
2016-03-23	tcofoegbu	JAL-2009 added programmatic custom feature setting...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	blob \| commitdiff \| diff to current
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile	blob \| commitdiff \| diff to current
2015-06-10	tcofoegbu	JAL-1641 updated applet version	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-969 hasHiddenRows is now an interface method	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-969 javadoc and mark interface overrides for clarity	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2015-01-09	Jim Procter	Merge branch 'JAL-1372_referenceseq' into feature_29...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-09-12	j.procter@dundee...	JAL-1486 JAL-535 refactor code for trimming alignment...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 model and api for feature display list on...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-961 store result of conservation analysis worker...	blob \| commitdiff \| diff to current
2014-02-17	Jim Procter	JAL-1445 expose columnSelection setter.	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-10-11	Jim Procter	JAL-1385 expose core view model methods in interface	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 JAL-535 refactor sequence colour settings...	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 expose core view model methods in interface	blob \| commitdiff \| diff to current
2013-08-30	Jim Procter	JAL-1370 JAL-1371 flags for display and colour of view...	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 JAL-966 refactor group/alignment associated...	blob \| commitdiff \| diff to current
2012-08-29	jprocter	JAL-1155 fix panel length calculation for grouped graph...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	extend API	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-961) more calculation annotation and result object...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-18	jprocter	backout parts of the interface from another development...	blob \| commitdiff \| diff to current
2011-10-18	jprocter	(Jalview 3) refactored Graphics2D annotation rendering...	blob \| commitdiff \| diff to current

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