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[jalview.git] / src / jalview / gui / AlignFrame.java

2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff
2014-11-28	Jim Procter	JAL-1604 formatting	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1604 revised wording and internationalised dialog	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 JAL-966 new method to retrieve all views	blob \| commitdiff \| diff to current
2014-11-27	Charles Ofoegbu	JAL-1604 Entire sequence submision for MSA job bugfix	blob \| commitdiff \| diff to current
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	JAL-1264 update annotation panel dimensions before...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	Merge branch 'features/JAL-1152annotationSorting' of...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help docume...	blob \| commitdiff \| diff to current
2014-11-03	Jim Procter	Merge branch 'develop' into features/JAL-1152annotation...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 prototype of new Annotations menu with sort...	blob \| commitdiff \| diff to current
2014-10-27	Jim Procter	Merge branch 'Release_2_8_2_Branch' into merge_r282_dev	blob \| commitdiff \| diff to current
2014-10-10	gmungoc	JAL-1481 wrap tooltip in html	blob \| commitdiff \| diff to current
2014-10-08	gmungoc	Merge branch 'Release_2_8_2_Branch' into	blob \| commitdiff \| diff to current
2014-10-07	gmungoc	JAL-1264 wip	blob \| commitdiff \| diff to current
2014-10-03	Jim Procter	JAL-1355 removed all top level html tags from message...	blob \| commitdiff \| diff to current
2014-10-03	gmungoc	JAL-1506 delete all warning; JAL-1264 show/hide annotations	blob \| commitdiff \| diff to current
2014-09-25	gmungoc	JAL-1264 tidy up use of MouseListener for showHideAnnot...	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	gmungoc	JAL-1264 first cut of panel for annotation show/hide...	blob \| commitdiff \| diff to current
2014-09-19	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-07-18	j.procter@dundee...	ensure the dataset is instantiated before materialising...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1383 scrubbed envision GUI and documentation	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1485 JAL-1473 use compound i18n messages to constru...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 flag and jalview_properties setting to control...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 new calculation menu option to recover the...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	tidy imports	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 tree calcs performed with ScoreModelI instances	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 menu entries for different score models availa...	blob \| commitdiff \| diff to current
2014-02-21	Jim Procter	JAL-1354 use real var-args method signature to avoid...	blob \| commitdiff \| diff to current
2014-02-17	Jim Procter	JAL-535 interface for GUI state update methods that...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-10-17	Jim Procter	JAL-1397 make sure ColourschemeI instances are up to...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 group/ungroup sequences with command/ctrl...	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 refactor logic to AlignmentViewController	blob \| commitdiff \| diff to current
2013-10-05	Jim Procter	JAL-1379 graceful degradation to legacy service when...	blob \| commitdiff \| diff to current
2013-09-18	Jim Procter	JAL-1355 - fix compilation errors: typos and missing...	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2013-06-17	Jim Procter	JAL-1312 more helpful error message when translation...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1173 try to catch OOMs when loading annotation...	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 enable logo display when normalise option selected	blob \| commitdiff \| diff to current
2012-08-29	jprocter	JAL-48 patch NPE when encountering an alignment window...	blob \| commitdiff \| diff to current
2012-08-28	jprocter	JAL-1145 patch: sequence associated annotation with...	blob \| commitdiff \| diff to current
2012-08-24	jprocter	JAL-1143 - ensure we revalidate annotation panel height...	blob \| commitdiff \| diff to current
2012-08-07	jprocter	JAL-975 JAL-1137 debug messages for web service client...	blob \| commitdiff \| diff to current
2012-08-01	jprocter	JAL-976 ensure protein disorder services appears in...	blob \| commitdiff \| diff to current
2012-06-15	jprocter	JAL-535 refactoring todo	blob \| commitdiff \| diff to current
2012-06-15	jprocter	Extended IProgressIndicator with method to check if...	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor reordering code operating directly...	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-969 - refactor colourscheme machinery from GUI...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2012-05-24	jprocter	TODO: JAL-1108	blob \| commitdiff \| diff to current
2012-05-24	jprocter	JAL-1078 - removed 'Load Score File' menu item and...	blob \| commitdiff \| diff to current
2012-05-24	jprocter	todo: JAL-1108	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067 report any warning messages to user	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067, JAL-1105 - refactor parser to fit Jalview...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2012-04-24	jprocter	JAL-1075, JAL-1061, JAL-1064 - introduced second tier...	blob \| commitdiff \| diff to current
2012-04-20	jprocter	JAL-1064 - hack to create menu item label for each...	blob \| commitdiff \| diff to current
2012-03-27	jprocter	formatting	blob \| commitdiff \| diff to current
2012-03-27	jprocter	JAL-976 - tweak web services gui so empty menus don...	blob \| commitdiff \| diff to current
2011-11-03	jprocter	(JAL-978) discover JABA1 and JABA2 services and generat...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	(JAL-963) refactor RNA helix helper class to schemes	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-11	jprocter	normalised logo rendering (JAL-958)	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-07	jprocter	merge Jan and Lauren's RNA GUI changes into develop...	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-574 added option to enable/disable 'follow selectio...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-940 - removed legacy service options from preferenc...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	blob \| commitdiff \| diff to current
2011-09-15	jprocter	JAL-854 tweaked menu layout so services appear before...	blob \| commitdiff \| diff to current
2011-08-17	jprocter	JAL-853 use service action attribute to index services...	blob \| commitdiff \| diff to current
2011-07-29	janengelhardt	JAL-885; Implementation of StructureFrequency.java...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-842; toy example to insert nucleotides in sequences...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-841; Structure trigger token in jalview.io.Alignmen...	blob \| commitdiff \| diff to current
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