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Merge branch 'develop' into alpha/JAL-3362_Jalview_212_alpha
[jalview.git] / src / jalview / gui / AlignViewport.java
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_... blob | commitdiff
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy blob | commitdiff | diff to current
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks blob | commitdiff | diff to current
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default blob | commitdiff | diff to current
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... blob | commitdiff | diff to current
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit... blob | commitdiff | diff to current
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants... blob | commitdiff | diff to current
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... blob | commitdiff | diff to current
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage blob | commitdiff | diff to current
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport blob | commitdiff | diff to current
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... blob | commitdiff | diff to current
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected blob | commitdiff | diff to current
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... blob | commitdiff | diff to current
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... blob | commitdiff | diff to current
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... blob | commitdiff | diff to current
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... blob | commitdiff | diff to current
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... blob | commitdiff | diff to current
2018-05-31 Jim ProcterMerge branch 'spike/JAL-1950_hmmer3client' into feature... blob | commitdiff | diff to current
2018-05-31 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client blob | commitdiff | diff to current
2018-03-30 gmungocJAL-2939 field/method naming more consistent blob | commitdiff | diff to current
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo blob | commitdiff | diff to current
2018-03-16 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... blob | commitdiff | diff to current
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip) blob | commitdiff | diff to current
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer blob | commitdiff | diff to current
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call blob | commitdiff | diff to current
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 blob | commitdiff | diff to current
2017-11-15 gmungocJAL-2835 spike updated with latest blob | commitdiff | diff to current
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 blob | commitdiff | diff to current
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-09-29 kiramtJAL-2674 finish with iterators for now blob | commitdiff | diff to current
2017-09-28 kiramtJAL-2647 more iterators blob | commitdiff | diff to current
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose... blob | commitdiff | diff to current
2017-09-05 gmungocJAL-2225 unused collateForPdb removed blob | commitdiff | diff to current
2017-08-21 Jim ProcterMerge branch 'develop' into trial_merge/JAL-1950 spike/JAL-1950_hmmer3client blob | commitdiff | diff to current
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame blob | commitdiff | diff to current
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment blob | commitdiff | diff to current
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons blob | commitdiff | diff to current
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff | diff to current
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics blob | commitdiff | diff to current
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class blob | commitdiff | diff to current
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... blob | commitdiff | diff to current
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... blob | commitdiff | diff to current
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling blob | commitdiff | diff to current
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 use constant for preference token blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... blob | commitdiff | diff to current
2017-04-24 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices blob | commitdiff | diff to current
2017-03-21 kiramtJAL-2388 Made ViewportRanges final blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... blob | commitdiff | diff to current
2017-03-08 gmungocJAL-2435 copy font changes across split screen blob | commitdiff | diff to current
2017-03-07 kiramtJAL-2388 Missed commit blob | commitdiff | diff to current
2017-03-06 kiramtJAL-2388 Dependency tidy blob | commitdiff | diff to current
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... blob | commitdiff | diff to current
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Reverted to previous blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile blob | commitdiff | diff to current
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... blob | commitdiff | diff to current
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... blob | commitdiff | diff to current
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow blob | commitdiff | diff to current
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... blob | commitdiff | diff to current
2017-02-10 gmungocJAL-2371 small move of code, typo correction blob | commitdiff | diff to current
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... blob | commitdiff | diff to current
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... blob | commitdiff | diff to current
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... blob | commitdiff | diff to current
2016-12-05 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client blob | commitdiff | diff to current
2016-11-28 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane blob | commitdiff | diff to current
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 license header blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-09-25 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client blob | commitdiff | diff to current
2016-09-22 gmungocJAL-2216 new dispose() method to null references blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-08-24 gmungocJAL-1854 removed pointless method override blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-06-29 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client blob | commitdiff | diff to current
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... blob | commitdiff | diff to current
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