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[jalview.git] / src / jalview / structure / StructureSelectionManager.java

2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-17	tcofoegbu	JAL-2262 JAL-2195 Improvement to set PDBId availability...	blob \| commitdiff
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 bug fix for mapping local structure...	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-16	gmungoc	JAL-2164 removed unused parameters from JmolParser...	blob \| commitdiff \| diff to current
2016-09-13	tcofoegbu	Revert "JAL-2164 JAL-1919 disabled and removed PDB...	blob \| commitdiff \| diff to current
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled and removed PDB file parser...	blob \| commitdiff \| diff to current
2016-09-07	Jim Procter	JAL-1803 transfer mapped chain’s PDBEntry to the *datas...	blob \| commitdiff \| diff to current
2016-08-24	Jim Procter	JAL-2106 javadoc for sifts mapping method	blob \| commitdiff \| diff to current
2016-08-24	Jim Procter	JAL-2106 prevent SIFTS mappings for sequences that...	blob \| commitdiff \| diff to current
2016-07-26	tcofoegbu	JAL-2157 bugfix for issues from enum refactoring	blob \| commitdiff \| diff to current
2016-06-15	tcofoegbu	JAL-2002 disabled 'Best Uniport Coverage' filter. JAL...	blob \| commitdiff \| diff to current
2016-06-10	tcofoegbu	JAL-1479 updated SIFTS FTP download URL, added improvem...	blob \| commitdiff \| diff to current
2016-06-08	tcofoegbu	JAL-1479 JAL- Fix to eradicate duplicate mapping output...	blob \| commitdiff \| diff to current
2016-03-30	tcofoegbu	JAL-2038 bug fix for NPE while setting progress message...	blob \| commitdiff \| diff to current
2016-03-24	gmungoc	JAL-2032 structure follow mouseover in a copy of a...	blob \| commitdiff \| diff to current
2016-03-22	tcofoegbu	JAL-1919 code improvement to make PDB sequence fetcher...	blob \| commitdiff \| diff to current
2016-03-21	tcofoegbu	develop merge	blob \| commitdiff \| diff to current
2016-02-25	tcofoegbu	JAL-1919 initial support for mmCIF using JMol API....	blob \| commitdiff \| diff to current
2016-02-20	gmungoc	Merge branch 'develop' into features/JAL-653_JAL-1766_h...	blob \| commitdiff \| diff to current
2016-02-19	tcofoegbu	JAL-2009 Codes to enable storing inserted residues...	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-2010 simple prototype of 'Highlight Selection'...	blob \| commitdiff \| diff to current
2016-02-01	gmungoc	Merge branch 'develop' into features/JAL-653_JAL-1766_h...	blob \| commitdiff \| diff to current
2016-01-29	tcofoegbu	JAL-1979 refactor out duplicated similar block of code...	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	Merge branch 'develop' into JAL-1705_trialMerge	blob \| commitdiff \| diff to current
2016-01-26	tcofoegbu	JAL-1999 JAL-1479 implemented configurable fail-safe...	blob \| commitdiff \| diff to current
2016-01-11	tcofoegbu	JAL-1990 added a progress indicator for Structure Choos...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 hold AlignedCodonFrame collections as list...	blob \| commitdiff \| diff to current
2015-11-17	tcofoegbu	JAL-1479 Refactored Sifts configuration preference...	blob \| commitdiff \| diff to current
2015-11-16	tcofoegbu	JAL-1967 JAL-1479 refactored sequence<->structure mappi...	blob \| commitdiff \| diff to current
2015-11-13	tcofoegbu	JAL-1479 added transfer of residue annotation for SIFTS...	blob \| commitdiff \| diff to current
2015-11-11	tcofoegbu	JAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping	blob \| commitdiff \| diff to current
2015-11-05	tcofoegbu	JAL-1479 SiftClient house keeping	blob \| commitdiff \| diff to current
2015-10-28	tcofoegbu	JAL-1479 added support for SIFTs mapping output viewing...	blob \| commitdiff \| diff to current
2015-10-28	tcofoegbu	JAL-1887 JAL-1479 bugfix for incorrect start/end for...	blob \| commitdiff \| diff to current
2015-10-22	tcofoegbu	JAL-1479 added basic support for SIFTs mapping - more...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDB...	blob \| commitdiff \| diff to current
2015-10-14	tcofoegbu	JAL-1926 added supporting model changes to enable savin...	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1830 dropped reference counts for mappings, instead...	blob \| commitdiff \| diff to current
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	blob \| commitdiff \| diff to current
2015-06-22	gmungoc	JAL-892 tidy Varna panel names; JAL-1789 simplified...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1752 structure highlight scoped to only its mapped...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1622 code tidy only, no functional change	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	blob \| commitdiff \| diff to current
2015-05-06	gmungoc	JAL-1725 broadcast empty selection (to clear selection) features/JAL-1725chimeraListener	blob \| commitdiff \| diff to current
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera select...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 unused variable	blob \| commitdiff \| diff to current
2014-11-18	Jim Procter	JAL-674 make temperature factor, local secondary struct...	blob \| commitdiff \| diff to current
2014-11-17	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-11-13	gmungoc	merge	blob \| commitdiff \| diff to current
2014-11-12	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	JAL-974 fix class contamination for jalviewLite build	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	JAL-674 use the getMapping/transfer to transfer annotat...	blob \| commitdiff \| diff to current
2014-10-31	Jim Procter	JAL-674 JAL-961 pass row reference to handler to check...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 use PDB ID<>File registry to look up correct...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 flag and proxy method to distinguish setMapping...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 map on StructureSelectionManager to record...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-10-21	Jim Procter	JAL-674 don't create multiple secondary structure lines...	blob \| commitdiff \| diff to current
2014-10-21	Jim Procter	JAL-1551 formatting	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-08-27	Jim Procter	JAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22...	blob \| commitdiff \| diff to current
2013-07-07	Jim Procter	JAL-1332 make SSM context discovery safer (particularly...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-03-02	jprocter	efficiency, and ensure mouseover messages originating...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-08-03	jprocter	fix NPE when applets stop. seems to make the simple...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-842; Implement transmitting of Jalview Sequence...	blob \| commitdiff \| diff to current
2011-07-05	jprocter	ignore any events after manager has already been finalized.	blob \| commitdiff \| diff to current
2011-06-23	jprocter	patch for JAL-846 made targetChain mapping constraint...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-05-05	jprocter	added simple stdout debug function	blob \| commitdiff \| diff to current
2011-02-18	jprocter	call to release any explicit event handler references...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	avoid creating lots of identical search results. patch...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	blob \| commitdiff \| diff to current
2011-01-12	jprocter	javadoc	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-31	jprocter	fixed various null pointer exceptions that occur when...	blob \| commitdiff \| diff to current
2010-08-27	jprocter	patch re issues.jalview.org/browse/JAL-583 : hack to...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	check that we have mappings before trying to broadcast...	blob \| commitdiff \| diff to current
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