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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentSorter.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2023-05-22
James Procter
JAL-1551 spotless
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commitdiff
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diff to current
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
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diff to current
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
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diff to current
2023-02-23
James Procter
JAL-4134 - brutal hack to build a tree clustering colum...
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commitdiff
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
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diff to current
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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diff to current
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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diff to current
2018-06-22
gmungoc
JAL-3032 avoid assignments on the same line as synchronized
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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diff to current
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
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commitdiff
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diff to current
2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
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commitdiff
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diff to current
2017-05-23
gmungoc
JAL-2490 find features for export as GFF, JAL-2548...
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commitdiff
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diff to current
2017-05-22
gmungoc
JAL-2544 check feature overlaps selection region
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commitdiff
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diff to current
2017-05-19
gmungoc
JAL-2544 only include features in selected columns...
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commitdiff
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diff to current
2017-05-19
gmungoc
JAL-2490 performant lookup of features for sorting
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commitdiff
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diff to current
2017-05-19
gmungoc
JAL-2505 unit test for sort by feature density, Javadoc
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commitdiff
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diff to current
2017-05-18
gmungoc
JAL-2490 initial unit tests prior to refactoring
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commitdiff
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diff to current
2017-03-24
gmungoc
JAL-838 move two callers off Comparison.PID and depreca...
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diff to current
2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
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diff to current
2016-02-12
gmungoc
JAL-2008 updates for String[] to List<String> change
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diff to current
2016-02-04
gmungoc
JAL-2005 added (stable) sort methods parameterised by
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
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commitdiff
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
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commitdiff
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
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2014-09-23
darolmar
JAL-1355
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-06-13
jprocter
javatidy
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diff to current
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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diff to current
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-09-16
jprocter
patch for JAL-935 - warning messages raised when alignm...
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-14
jprocter
fix order/reverse order issue for sortByFeature
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diff to current
2009-08-21
jprocter
new sortbyPID for specific start/end region
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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2008-12-19
jprocter
sort by length
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diff to current
2008-12-15
jprocter
temporary fix and note about null feature group mucking...
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commitdiff
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diff to current
2008-12-08
jprocter
output average score to stdout
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commitdiff
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diff to current
2008-12-08
jprocter
new sort functions for ordering sequence by annotated...
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
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2007-04-26
jprocter
added 'sort by sequence associated annotation score'
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diff to current
2007-02-07
amwaterhouse
Formatting
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commitdiff
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diff to current
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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commitdiff
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diff to current
2006-12-05
amwaterhouse
sequence is char []
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2006-11-09
amwaterhouse
1.1 compatible
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diff to current
2006-11-07
amwaterhouse
hidden seqs and setOrder bug fixed
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diff to current
2006-10-26
amwaterhouse
Sequences may be hidden, not in this aligment
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diff to current
2006-10-24
amwaterhouse
setOrder is public
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commitdiff
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diff to current
2006-08-21
amwaterhouse
header updated
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commitdiff
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diff to current
2006-07-18
amwaterhouse
Works on strings, not seqs
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diff to current
2006-07-12
amwaterhouse
sequences are private in SequenceGroup
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commitdiff
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
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diff to current
2005-06-16
amwaterhouse
Sort Groups modified
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commitdiff
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diff to current
2005-06-08
amwaterhouse
Formatted source
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commitdiff
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diff to current
2005-06-08
amwaterhouse
GPL license added
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commitdiff
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diff to current
2005-05-30
jprocter
Changed sortByPID to use the gapped PID function.
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commitdiff
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diff to current
2005-05-24
jprocter
several ordering bug fixes.
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diff to current
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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diff to current
2005-05-20
jprocter
Various sort methods added and bugs fixed (coping with...
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diff to current
2004-12-14
amwaterhouse
Choosing sort again reverses the sort order
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commitdiff
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diff to current
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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diff to current