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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
analysis
/
PCA.java
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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diff to current
2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
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diff to current
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
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diff to current
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
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diff to current
2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
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diff to current
2018-04-25
gmungoc
JAL-1767 minor field tidying prior to functional changes
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-04-11
gmungoc
JAL-2403 improved ScoreModelI hierarchy as per Kira...
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2017-04-10
gmungoc
JAL-2403 unit tests for PCA.computeSimilarity, signatur...
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diff to current
2017-04-10
gmungoc
JAL-2403 removed remaining jvCalcMode references from PCA
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2017-03-23
gmungoc
JAL-2397 scale PCA by PID to alignment width to match...
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diff to current
2017-03-23
gmungoc
JAL-2393 code tidy and comments, PIDDistanceModel depre...
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2017-02-27
gmungoc
JAL-1632 add score model params to PCAModel and PCA...
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2017-02-24
gmungoc
JAL-838 added 'SeqSpace' PID mode, added parameters...
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diff to current
2017-02-24
gmungoc
JAL-1403 preserve range of distance scores for similarity
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2017-02-24
gmungoc
JAL-2403 JAL-1483 push 'reverseRange' inside Matrix
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2017-02-23
gmungoc
JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
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2017-02-21
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-02-20
gmungoc
JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
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2017-02-13
gmungoc
JAL-1632 JAL-2416 load score matrices from file, as...
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diff to current
2017-02-13
gmungoc
JAL-1632 first cut of Tree chooser dialog and ScoreMode...
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diff to current
2017-02-07
gmungoc
JAL-2379 removed unused commented code
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diff to current
2017-02-06
gmungoc
JAL-2379 computePairwiseScores() moved to ScoreMatrix
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2017-02-03
gmungoc
JAL-2379 'direct' pairwise score calculation for PCA...
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2017-01-26
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
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2017-01-26
gmungoc
JAL-2380 code tidy after review
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2017-01-17
gmungoc
JAL-2379 use SparseMatrix for encoded sequences, tidy...
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-04-21
Jim Procter
JAL-1473 refactor score matrices and tree score calcula...
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2014-02-25
Jim Procter
JAL-1454 catch exceptions during calculation and report...
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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diff to current
2012-06-15
jprocter
formatting
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commitdiff
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diff to current
2012-06-15
jprocter
JAL-1125 option to switch between Jalview and SeqSpace...
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diff to current
2012-06-15
jprocter
Merge branch 'JAL-1013_pca_rna_dna' into develop
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diff to current
2011-12-08
jprocter
(JAL-1013) allow sequence type to be specified enabling...
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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2010-08-18
jprocter
output the eigenvector matrix in full: JAL-616
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commitdiff
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2010-04-30
jprocter
jalview 2.5 release banner
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diff to current
2009-06-08
jprocter
apply gpl development license
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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2007-02-07
amwaterhouse
Formatting
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commitdiff
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diff to current
2006-08-21
amwaterhouse
header updated
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diff to current
2006-07-18
amwaterhouse
Takes string[] instead of seq[]
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2005-09-23
amwaterhouse
Capture output as details
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commitdiff
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diff to current
2005-09-08
amwaterhouse
REmove unnecessary imports
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commitdiff
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
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diff to current
2005-06-08
amwaterhouse
Formatted source
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commitdiff
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diff to current
2005-06-08
amwaterhouse
GPL license added
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diff to current
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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2005-01-12
jprocter
random change 3
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diff to current
2005-01-12
jprocter
another dummy.
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diff to current
2005-01-12
jprocter
irrelevant comment.
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diff to current
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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diff to current