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JAL-1632 add score model params to PCAModel and PCA constructors
[jalview.git] / src / jalview / bin /
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... tree | commitdiff
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-26 gmungocJAL-1688 compiler warnings removed tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... tree | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... tree | commitdiff
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity tree | commitdiff
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... tree | commitdiff
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... tree | commitdiff
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of... tree | commitdiff
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... tree | commitdiff
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... tree | commitdiff
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... tree | commitdiff
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur... tree | commitdiff
2014-06-06 Jim ProcterJAL-1519 - tidy build properties management code tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-28 Jim ProcterJAL-1507 bugfix tree | commitdiff
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into develop tree | commitdiff
2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for readin... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-08-30 darolmari18n date/time handling tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-13 Jim ProcterMerge branch 'JAL-1314_headlessFlag' into develop tree | commitdiff
2013-06-13 Jim ProcterJAL-1314 allow 'nogui' and 'headless' as synonyms for... tree | commitdiff
2013-05-24 Jim ProcterMerge branch 'menard' into develop_m2_8_1_2 tree | commitdiff
2013-05-13 Jim ProcterMerge branch 'JAL-1289_initCallBack' into develop tree | commitdiff
2013-05-13 Jim ProcterJAL-1289 call oninit callback even if no alignment... tree | commitdiff
2012-12-07 jproctermenu for choosing between 'protein' and 'RNA' mode... tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalvi... tree | commitdiff
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display threa... tree | commitdiff
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt tree | commitdiff
2012-08-24 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-24 jprocterJAL-1087 skip processing any of the other command line... tree | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. tree | commitdiff
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio... tree | commitdiff
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... tree | commitdiff
2012-02-29 jprocterJAL-972 - refactored local source builder to registry... tree | commitdiff
2012-02-13 jprocterremove dead imports tree | commitdiff
2012-02-13 jprocterremoved all dasobert code and begun to replace with... tree | commitdiff
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into develop tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation tree | commitdiff
2011-11-09 jprocter(JAL-986) getter for integer user preference properties tree | commitdiff
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... tree | commitdiff
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) tree | commitdiff
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... tree | commitdiff
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... tree | commitdiff
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... tree | commitdiff
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