Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / datamodel / ColumnSelection.java
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-12 kiramtJAL-2591 Updates following code review
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support...
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio...
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden...
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into...
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected()
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match...
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to...
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case...
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for...
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when...
2016-04-29 Jim ProcterJAL-966 JAL-1553
 todo: remove UI components from Colum...
2016-04-29 Jim ProcterJAL-1551 formatting

2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque...
2016-04-29 Jim ProcterJAL-1551 formatting
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to...
2016-04-08 Jim ProcterJAL-2053 JAL-1551 javadoc and simpler code
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original...
2016-04-04 Jim ProcterJAL-2001 catch -ve column values
2016-04-04 Jim ProcterJAL-2001 faster check for a column being selected
2016-04-04 Jim ProcterJAL-2001 javadoc
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with...
2016-04-04 Jim ProcterJAL-2001 JAL-1722 - store selection as ArrayList and...
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-12 Jim ProcterJAL-1115 typecast
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-12-17 jprocter1.1 compat
2010-12-17 jprocter1.1 compat
2010-12-17 jprocterrefactored gap insert/visible view modification code...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-08 jprocterPatch for incorrect column selection when hidden region...
2010-04-30 jprocterjalview 2.5 release banner
2009-11-09 jprocterno Vector(Vector) copy constructor in 1.2
2009-11-06 jproctersetting and merging selected columns from another selec...
2009-06-08 jprocterapply gpl development license
2009-04-14 jprocterpatch to fix occasional arrayoutofbounds exception...
2008-09-04 jproctermerge from 2_4_Release branch
2007-11-08 jprocterend must be greater than blockstart
2007-10-04 jprocterrefactored invertColumnSelection as an object method
2007-10-02 jprocterjavadoc and operator for editing AlignmentAnnotation...
2007-04-11 amwaterhouseIf hiddenColumns are null, then column is viisble
2007-03-19 jprocterjavadoc typo
2007-02-07 amwaterhouseFormatting
2006-12-05 amwaterhouseSequence is char []
2006-11-24 amwaterhouseFix load 1 col hidden bug
2006-10-25 amwaterhouseAdjusts hiddenColumns correctly
2006-10-15 jprocterfixed array out of bounds exception in copy constructor
2006-10-10 amwaterhouse1.1 compatible
2006-10-06 jprocternew getVisibleContigs method mirrors the getVisibleCont...
2006-09-07 jprocteradded copy consensus sequence to consensus annotation...
2006-08-22 amwaterhousemake 1.1 compatible
2006-08-22 jprocterhidden region recovery in JPred and new hidden region...
2006-08-21 amwaterhouseheader updated
2006-08-21 amwaterhouse1.1 compatible
2006-08-21 jprocterremoveGaps method can record changes in alignment colum...
2006-08-08 amwaterhouseOut by 1 error on show columns
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-28 amwaterhouseOut by one error on reveal columns
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view...
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