JAL-2473 removed unused fields in JalviewDialog
[jalview.git] / src / jalview / datamodel / SequenceI.java
2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-2110 additional tests for setDatasetSequence, javad...
2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
2016-09-07 Jim ProcterJAL-1803 first pass at updatePDBEntry
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
2016-07-12 Jim ProcterJAL-2110 javadoc
2016-06-23 Jim ProcterJAL-2110 SequenceI.isProtein method
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
2016-04-05 Jim ProcterJAL-2046 explicit contract for get/set SequenceFeatures...
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable savin...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret...
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank...
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-12 Jim Procterjavadoc
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-28 gmungocJAL-1610 check reference annotations against alignment...
2014-11-12 Jim Procterjavadoc
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label)
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-10-11 Jim ProcterJAL-1114 API javadoc
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
2012-07-10 Anne Menardv2
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-01-22 jprocternew method to get map of sequence positions correspondi...
2007-11-30 jprocterjavadoc and transferAnnotation method
2007-10-02 jprocterjavadoc
2007-09-29 jprocterupdatePDBEntry method to add any PDBEntry from the...
2007-08-30 jproctercreate dataset sequence method
2007-07-31 jprocterdebugging cross references and duplicate sequence db...
2007-06-17 jprocterjavadoc
2007-04-26 jprocterget annotation by label string
2007-04-23 amwaterhouseremove alignmentAnnotation added
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef...
2007-02-07 amwaterhouseFormatting
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 jprocterdatasetSequence derive method and some checks
2006-12-05 amwaterhouseSequence is char []
2006-11-13 amwaterhouseSequence colour moved to viewport
2006-10-30 amwaterhousedeleteSequenceFeature
2006-10-24 amwaterhousechangeCase, removeGaps moved to commands package
2006-10-06 jprocterjavadoc
2006-08-21 amwaterhouseheader updated
2006-08-21 jprocterremove gaps method from AlignFrame.remove_gaps_actionPe...
2006-08-14 jprocterfixed off by one bug in end sequence from getSubSequenc...
2006-08-09 jprocternew SequenceI method for making a sub sequence from...
2006-07-21 amwaterhouseDBRef is an array, not vector
2006-05-02 amwaterhouseToggle case added to popup menu
2006-04-28 amwaterhousechangeCase
2006-03-16 amwaterhouseHiddenSequence methods
2006-02-24 amwaterhouseFeatures are now an array, not vector
2006-02-03 amwaterhousehas ref to annotation
2005-12-06 amwaterhouseafter merge
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-04-06 jprocterNew method for helping to quickly map different aligned...
2005-03-09 amwaterhouseallows deletion of chars
2005-02-04 amwaterhouseSequenceFeature display added
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