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JAL-1355
[jalview.git] / src / jalview / datamodel /
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and... tree | commitdiff
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to... tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 javadoc tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field... tree | commitdiff
2013-10-11 Jim ProcterJAL-1114 API javadoc tree | commitdiff
2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381 tree | commitdiff
2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into develop tree | commitdiff
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi... tree | commitdiff
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to... tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 proxy method for synchronising internal Alignm... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 bugfix equals tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva... tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1312_ambiguity_na' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 patch for regression noticed after patch to... tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-31 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-05-31 Jim ProcterJAL-1259 patch to avoid NPE tree | commitdiff
2013-05-31 Jim ProcterJAL-1259 patch to avoid NPE tree | commitdiff
2013-05-24 Jim ProcterJAL-1295 relaxed test for Annotation element equivalenc... tree | commitdiff
2013-05-24 Jim Procterjavadoc and formatting tree | commitdiff
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 sensible toString for benefi... tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2012-12-07 jprocterrevised renderer and annotation model to support differ... tree | commitdiff
2012-12-07 jprocterconvenience function to get the RNA model for an annota... tree | commitdiff
2012-12-07 jprocteruse new secstructure process algorithm tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when... tree | commitdiff
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor tree | commitdiff
2012-08-31 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... tree | commitdiff
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex tree | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. tree | commitdiff
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2012-07-10 Anne Menardv2 tree | commitdiff
2012-07-05 Anne MenardAdd support RNAML format tree | commitdiff
2012-07-03 jprocterJAL-961 allow calcId to be specified independently... tree | commitdiff
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop tree | commitdiff
2012-06-13 jprocterjavatidy tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly... tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... tree | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... tree | commitdiff
2012-05-24 jprocterensure annotation isn't added twice - note - this could... tree | commitdiff
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried... tree | commitdiff
2012-05-22 jprocterupdate the copy constructor tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2011-12-08 jprocter(JAL-1013) generalise binary sequence encoding scheme... tree | commitdiff
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot... tree | commitdiff
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... tree | commitdiff
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... tree | commitdiff
2011-10-21 jprocternew base class to hold core visualization settings... tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in... tree | commitdiff
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied... tree | commitdiff
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... tree | commitdiff
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... tree | commitdiff
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... tree | commitdiff
2011-07-25 janengelhardtFurther structure accessing feature tree | commitdiff
2011-07-25 janengelhardtContainer for VARNA classes are created according to... tree | commitdiff
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-08 jprocteropen each query result from an alignment datasource... tree | commitdiff
2011-07-06 jprocterensure selseq is trimmed to just sequences included... tree | commitdiff
2011-05-05 jprocteruncommentable debug message for JAL-771 tree | commitdiff
2011-04-21 jprocterallow an alignment annotation row to be removed and... tree | commitdiff
2011-04-21 jprocterallow an existing alignment annotation row to be bound... tree | commitdiff
2011-02-27 jprocterfirst patch for JAL-774 - ensure end is a valid bound... tree | commitdiff
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