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JAL-1685 further tests
[jalview.git]
/
src
/
jalview
/
datamodel
/
2015-03-10
gmungoc
JAL-1681 show cDNA consensus on protein alignment ...
tree
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commitdiff
2015-03-05
gmungoc
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-04
gmungoc
JAL-845 bug fixes correcting linked editing
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 implement alignment of protein to match cDNA...
tree
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commitdiff
2015-02-27
gmungoc
JAL-845 SplitFrame for "show product" and after alignin...
tree
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commitdiff
2015-02-20
gmungoc
JAL-1665 create dataset sequences in applet
tree
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commitdiff
2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 typecast
tree
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commitdiff
2015-02-12
Jim Procter
javadoc
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 List rather than vector for sequence groups...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 slightly more efficient detection of non-gap...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 @mungo TODO done: use StringUtils for delete...
tree
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commitdiff
2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
tree
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commitdiff
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
tree
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commitdiff
2015-01-20
Charles Ofoegbu
JAL-1553 enhancement of column selection by annotation...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 wrappers for common checks on ColumnSelection
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 ColumnSelection method to hide insertions...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new method to get a list of insertions in...
tree
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commitdiff
2015-01-18
gmungoc
JAL-1619 refactoring wip
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
tree
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commitdiff
2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
tree
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commitdiff
2015-01-14
gmungoc
JAL-1619 AlignedCodonFrame in new alignment should...
tree
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commitdiff
2015-01-12
gmungoc
JAL-1619 load/align cDNA for protein (wip)
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2015-01-07
gmungoc
JAL-845 TODO comment added
tree
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commitdiff
2015-01-04
gmungoc
JAL-1619 first draft of 'linked protein and cDNA'
tree
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commitdiff
2014-12-28
gmungoc
JAL-845 first working linked edit protein -> cDNA
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-16
gmungoc
JAL-1618 feature parsing bug (and formatting)
tree
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commitdiff
2014-12-16
gmungoc
JAL-1619 refactorings: Map, StringBuilder, Override
tree
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commitdiff
2014-12-16
gmungoc
JAL-845 formatting only (block parentheses)
tree
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
tree
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
tree
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-24
Jim Procter
JAL-1595 annotation score is total number of rna helices
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1489 change initial value to distinguish non-rna...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-1569 rna pair code in secondary structure character...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-674 JAL-1569 mark RNA helix number in the value...
tree
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commitdiff
2014-11-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-17
Jim Procter
formatting
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 JAL-407 instrument setDataset to add dataset...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1293 hide/show sequence annotations with hide/revea...
tree
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commitdiff
2014-11-12
Jim Procter
javadoc
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 formatting and imports
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
tree
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commitdiff
2014-11-03
Jim Procter
javadoc
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional informat...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
tree
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commitdiff
2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation posit...
tree
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commitdiff
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 JAL-1551 imports dropped during merge
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 source formatting
tree
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commitdiff
2014-10-21
Jim Procter
Merge branch 'features/JAL-1264_showHideAnnotations...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2014-10-16
Jim Procter
Merge branch 'feature/JAL-674_dssp' into features/JAL...
features/JAL-1264_showHideAnnotations
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-15
Jim Procter
JAL-348 JAL-674 JAL-1564 TODO and implementation error...
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 patch logic to test whether old and new sequenc...
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 JAL-1305 JAL-348 new liftOver method and test...
tree
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commitdiff
2014-10-10
gmungoc
JAL-1264 added getAlignmentAnnotations(calcId, label)
tree
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commitdiff
2014-10-10
gmungoc
JAL-1264 reverted (removed added method)
tree
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commitdiff
2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
tree
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commitdiff
2014-10-07
gmungoc
JAL-1264 wip
tree
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commitdiff
2014-10-06
Jim Procter
JAL-654 JAL-1264 sequence associated annotation is...
tree
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commitdiff
2014-10-06
Jim Procter
JAL-1115 TODO remove use of java.util.Vector
tree
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commitdiff
2014-10-06
Jim Procter
JAL-654 javadoc createDatasetSequence and transferAnnot...
tree
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commitdiff
2014-09-27
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1520 switch between Protein and non-canonical RNA...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 formatting and squash NPEs
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 make AnnotatedCollectionI context...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-04-25
Jim Procter
Merge branch 'JAL-1177_prop_rnasecstr' into develop
tree
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commitdiff
2014-04-25
Jim Procter
JAL-1177 propagate sequence associated annotation to...
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
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