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[jalview.git] / src / jalview / datamodel /
2015-03-18 gmungocMerge hack/JAL-1617 fake DBRef to develop tree | commitdiff
2015-03-13 gmungocJAL-845 refinements + tests for making mappings between... tree | commitdiff
2015-03-13 gmungocJAL-1686 @Override and/or TODO added to equals(Object... tree | commitdiff
2015-03-11 gmungocJAL-1684 fix bug in AlignmentView constructor tree | commitdiff
2015-03-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ... tree | commitdiff
2015-03-06 Jim ProcterMerge branch 'develop' into features/JAL-845splitPaneMe... tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-03-05 gmungocMerge branch 'develop' into features/JAL-845splitPaneMe... tree | commitdiff
2015-03-04 gmungocJAL-845 bug fixes correcting linked editing tree | commitdiff
2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA... tree | commitdiff
2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after alignin... tree | commitdiff
2015-02-20 gmungocJAL-1665 create dataset sequences in applet tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull... tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 typecast tree | commitdiff
2015-02-12 Jim Procterjavadoc tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... tree | commitdiff
2015-02-10 Jim ProcterJAL-1382 slightly more efficient detection of non-gap... tree | commitdiff
2015-02-10 Jim ProcterJAL-1382 @mungo TODO done: use StringUtils for delete... tree | commitdiff
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2015-02-06 gmungocJAL-845 further code/tests/refactoring tree | commitdiff
2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA... tree | commitdiff
2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing tree | commitdiff
2015-01-27 gmungocJAL-1588 new class renamed tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... tree | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... tree | commitdiff
2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked... tree | commitdiff
2015-01-20 Charles Ofoegbubasic house keeping tree | commitdiff
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... tree | commitdiff
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... tree | commitdiff
2015-01-18 gmungocJAL-1619 refactoring wip tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence tree | commitdiff
2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation tree | commitdiff
2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should... tree | commitdiff
2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip) tree | commitdiff
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29... tree | commitdiff
2015-01-07 gmungocJAL-845 TODO comment added tree | commitdiff
2015-01-04 gmungocJAL-1619 first draft of 'linked protein and cDNA' tree | commitdiff
2014-12-28 gmungocJAL-845 first working linked edit protein -> cDNA tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-16 gmungocJAL-1618 feature parsing bug (and formatting) tree | commitdiff
2014-12-16 gmungocJAL-1619 refactorings: Map, StringBuilder, Override tree | commitdiff
2014-12-16 gmungocJAL-845 formatting only (block parentheses) tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... tree | commitdiff
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop tree | commitdiff
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... tree | commitdiff
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... tree | commitdiff
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... tree | commitdiff
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... tree | commitdiff
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-17 Jim Procterformatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... tree | commitdiff
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... tree | commitdiff
2014-11-12 Jim Procterjavadoc tree | commitdiff
2014-11-03 Jim ProcterJAL-1578 formatting and imports tree | commitdiff
2014-11-03 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor... tree | commitdiff
2014-11-03 Jim Procterjavadoc tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method tree | commitdiff
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit... tree | commitdiff
2014-10-23 gmungocJAL-1264 further refactoring and tests tree | commitdiff
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 source formatting tree | commitdiff
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequenc... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test... tree | commitdiff
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label) tree | commitdiff
2014-10-10 gmungocJAL-1264 reverted (removed added method) tree | commitdiff
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into tree | commitdiff
2014-10-07 gmungocJAL-1264 wip tree | commitdiff
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... tree | commitdiff
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector tree | commitdiff
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... tree | commitdiff
2014-09-27 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-23 gmungocJAL-1264 first cut of panel for annotation show/hide... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
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