2016-07-12 |
gmungoc | FileFormat enum wip changes |
tree | commitdiff |
2016-07-12 |
tcofoegbu | JAL-2135 NPE bugfix when parsing a structure file with... |
tree | commitdiff |
2016-07-11 |
gmungoc | file format enum wip changes |
tree | commitdiff |
2016-07-09 |
gmungoc | Merge branch 'develop' into features/JAL-2110_crossRefD... features/JAL-2110_crossRefDuplications |
tree | commitdiff |
2016-07-08 |
tcofoegbu | JAL-1919 Fixed failing tests, enabled HETATM processing... |
tree | commitdiff |
2016-07-06 |
gmungoc | JAL-2110 ensuring mapped dbrefs between protein and cds |
tree | commitdiff |
2016-07-01 |
tcofoegbu | JAL-2135 bugfix for error preventing processing of... |
tree | commitdiff |
2016-06-30 |
tcofoegbu | JAL-1919 updated PDBSequenceFetcherTest and JMol parser... |
tree | commitdiff |
2016-06-23 |
gmungoc | JAL-2130 now simply viewer.dispose() to close down... |
tree | commitdiff |
2016-06-21 |
Jim Procter | Merge branch 'features/JAL-1956_featureStyles' into... |
tree | commitdiff |
2016-06-20 |
gmungoc | JAL-2130 call viewer.dispose() on closing Jmol |
tree | commitdiff |
2016-06-10 |
Jim Procter | JAL-1941 added test URL and notes about PyRNA restclient |
tree | commitdiff |
2016-05-31 |
gmungoc | JAL-2123 use "rlabel" command to highlight with label... |
tree | commitdiff |
2016-05-13 |
gmungoc | JAL-2105 capture Ensembl data version, check REST versi... |
tree | commitdiff |
2016-05-10 |
gmungoc | Merge branch 'develop' into features/JAL-1956_featureStyles |
tree | commitdiff |
2016-04-29 |
gmungoc | JAL-2051 better checking of retrieved / duplicated... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-1705 refactored/utility methods to detect e.g.... |
tree | commitdiff |
2016-04-11 |
gmungoc | JAL-1705 code/comment tidy only |
tree | commitdiff |
2016-04-11 |
gmungoc | JAL-2051 fetch Ensembl Gene accessions one at a time |
tree | commitdiff |
2016-04-06 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-06 |
tcofoegbu | JAL-2047 JAL-1919 fixed empty tooltip text when a cell... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2010 refactoring todo |
tree | commitdiff |
2016-04-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 fetch all Ensembl xrefs (except GO terms) |
tree | commitdiff |
2016-03-24 |
tcofoegbu | JAL-1919 Added ability to generate temprature factor... |
tree | commitdiff |
2016-03-23 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-23 |
gmungoc | JAL-1705 add DBRefEntry for 'self' to retrieved transcr... |
tree | commitdiff |
2016-03-22 |
tcofoegbu | resolve conflict with Mungo's merge |
tree | commitdiff |
2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
tree | commitdiff |
2016-03-22 |
gmungoc | JAL-1191 isolated SequenceOntology (BioJava wrapper... |
tree | commitdiff |
2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-03-16 |
gmungoc | JAL-1705 xref ENST to correct (ENSP) accession id |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 FeatureSettingsI now FeatureSettingsModelI |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
2016-03-15 |
tcofoegbu | JAL-1919 refined structure view annotation settings... |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 check Retry-After response header |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-1818 reimplemented sequence and annotation processi... |
tree | commitdiff |
2016-03-04 |
gmungoc | JAL-1705 EnsemblGenomes a top level db source |
tree | commitdiff |
2016-03-04 |
gmungoc | JAL-1705 parse 'description' from GFF as sequence descr... |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 PDBfile and JmolParser refactor |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
tree | commitdiff |
2016-02-22 |
gmungoc | JAL-1705 first pass at applying preset feature colourin... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 return Ensembl genes for model species for... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2010 simple prototype of 'Highlight Selection'... |
tree | commitdiff |
2016-02-12 |
gmungoc | Merge branch 'develop' into |
tree | commitdiff |
2016-02-09 |
tcofoegbu | merge develop |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1957 deleted stale comment |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1957 enabled multi-chain mapping and highlight... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-2003 export features on alignment, not alignment... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 set Uniprot xref as 'source dbref' (for SIFTS... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
2016-01-30 |
gmungoc | JAL-1705 refactored cross-reference fetching (CCDS... |
tree | commitdiff |
2016-01-29 |
gmungoc | JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring |
tree | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 add exon name to features and render on peptid... |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name... |
tree | commitdiff |
2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence... |
tree | commitdiff |
2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring |
tree | commitdiff |
2016-01-23 |
gmungoc | JAL-1705 compute peptide variants from dna; add "conseq... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 reworked Ensembl clients now fetching and... |
tree | commitdiff |
2016-01-21 |
tcofoegbu | JAL-1919 basic support for importing and viewing mmCIF... |
tree | commitdiff |
2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods... |
tree | commitdiff |
2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_... |
tree | commitdiff |
2015-12-03 |
gmungoc | JAL-1827 code and comment tidy up |
tree | commitdiff |
2015-12-02 |
gmungoc | JAL-1827 refactored to handle missing residues better |
tree | commitdiff |
2015-11-11 |
tcofoegbu | JAL-1479 JAL-1957 Added code to enable simultaneous... |
tree | commitdiff |
2015-11-11 |
tcofoegbu | JAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping |
tree | commitdiff |
2015-11-10 |
Jim Procter | Merge branch 'features/JAL-1705_ensembl' of source... features/JAL-1705_ensembl |
tree | commitdiff |
2015-11-09 |
gmungoc | JAL-1705 type enum can encapsulate the corresponding... |
tree | commitdiff |
2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
tree | commitdiff |
2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-1705_ensembl |
tree | commitdiff |
2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
tree | commitdiff |
2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
tree | commitdiff |
2015-09-10 |
Jim Procter | JAL-1645 licencing for new files in src |
tree | commitdiff |
2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
tree | commitdiff |
2015-09-03 |
gmungoc | JAL-1859 removed unneeded dependency on package not... |
tree | commitdiff |
2015-09-03 |
gmungoc | JAL-1828 lookup table to convert MSE to MET when parsin... |
tree | commitdiff |
2015-08-28 |
gmungoc | JAL-1836 temporary workaround for negative resNumIns... |
tree | commitdiff |
2015-08-26 |
gmungoc | JAL-1596 check for null pointer (thread running after... |
tree | commitdiff |
2015-08-26 |
gmungoc | JAL-1759 corrected syntax for 'atom picked' callback... |
tree | commitdiff |
2015-08-19 |
gmungoc | JAL-1742 suppress 'add chain' option for Jmol, pull... |
tree | commitdiff |
2015-08-05 |
Jim Procter | JAL-1821 patch for completeness - first model number... |
tree | commitdiff |
2015-08-03 |
Jim Procter | JAL-1821 JAL-1759 reinstate rotation speed configuratio... |
tree | commitdiff |
2015-08-03 |
Jim Procter | JAL-1821 JAL-1759 updated Jmol has different model... |
tree | commitdiff |
2015-08-03 |
Jim Procter | JAL-1821 avoid race condition when multiple structures... |
tree | commitdiff |
2015-07-08 |
gmungoc | JAL-1759 merge from develop |
tree | commitdiff |
2015-07-03 |
gmungoc | JAL-892 1 second delay for correct initial rendering... |
tree | commitdiff |
2015-06-30 |
gmungoc | JAL=1759 fix Jmol state command bug; remove debug output |
tree | commitdiff |
2015-06-30 |
gmungoc | JAL-1759 unused JmolPopup removed, code tidy for generics |
tree | commitdiff |
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