JAL-4125 Move confirmation of closing external viewer windows into the quit handler...
[jalview.git] / src / jalview / gui / AlignViewport.java
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold...
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
2020-02-06 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2019-12-09 gmungocJAL-3490 pull up getViewAsVisibleContigs to base class...
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq()
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'...
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle...
2018-12-06 gmungocJAL-3048 explicit instead of default 'No' response...
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-10-04 gmungocJAL-3132 set status message when over sequence id or...
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus
2018-07-03 Jim ProcterJAL-3048 openLinkedAlignment refactor to use dialogRunn...
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-28 kiramtJAL-2647 more iterators
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose...
2017-09-05 gmungocJAL-2225 unused collateForPdb removed
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-21 kiramtJAL-2388 Made ViewportRanges final
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-08 gmungocJAL-2435 copy font changes across split screen
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 license header
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-2216 new dispose() method to null references
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