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[jalview.git] / src / jalview / gui / AlignViewport.java

2023-02-03	James Procter	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...	blob \| commitdiff \| diff to current
2022-06-10	Jim Procter	JAL-2349 JAL-4027 JAL-3855 quick hack to add contact...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 better placement of call to notifyFeaturesChan...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2020-08-27	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-07-31	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-27	Jim Procter	Merge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	Merge branch 'develop' into features/JAL-3187_uitweaks	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3538 anti-aliasing enabled by default	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 better placement of call to notifyFeaturesChan...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2019-12-09	gmungoc	JAL-3490 pull up getViewAsVisibleContigs to base class...	blob \| commitdiff \| diff to current
2019-08-19	gmungoc	JAL-3412 calculateIdWidth - more consistency, constants...	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-06-24	Jim Procter	JAL-3330 mergeFeatureStyles - needs test coverage	blob \| commitdiff \| diff to current
2019-04-18	hansonr	Corrects incorrect calls to ViewportRanges.setEndSeq()	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-07	gmungoc	JAL-2250 default Apply Colour to All Groups selected	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	blob \| commitdiff \| diff to current
2018-12-18	gmungoc	JAL-3048 DialogRunnerI reduced to minimal implementation	blob \| commitdiff \| diff to current
2018-12-10	gmungoc	JAL-3048 wip externalise trigger from RunResponse	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-12-06	gmungoc	JAL-3048 response() renamed addResponse(); checkstyle...	blob \| commitdiff \| diff to current
2018-12-06	gmungoc	JAL-3048 explicit instead of default 'No' response...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-10-04	gmungoc	JAL-3132 set status message when over sequence id or...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-08-27	hansonr	JAL-3026 alignmentFrame.statusBar.setText -> .setStatus	blob \| commitdiff \| diff to current
2018-07-03	Jim Procter	JAL-3048 openLinkedAlignment refactor to use dialogRunn...	blob \| commitdiff \| diff to current
2017-11-21	kiramt	JAL-2759 Remove getVisibleBlocksIterator call	blob \| commitdiff \| diff to current
2017-11-21	kiramt	Merge branch 'develop' into feature/JAL-2759	blob \| commitdiff \| diff to current
2017-11-15	gmungoc	JAL-2835 spike updated with latest	blob \| commitdiff \| diff to current
2017-11-08	kiramt	Merge branch 'develop' into feature/JAL-2759	blob \| commitdiff \| diff to current
2017-11-08	Jim Procter	Merge branch 'develop' into bug/JAL-2225mapMultipleChains	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-29	kiramt	JAL-2674 finish with iterators for now	blob \| commitdiff \| diff to current
2017-09-28	kiramt	JAL-2647 more iterators	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 null more fields in AlignmentViewport.dispose...	blob \| commitdiff \| diff to current
2017-09-05	gmungoc	JAL-2225 unused collateForPdb removed	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copyi...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 More working split panel + new scrolling	blob \| commitdiff \| diff to current
2017-04-28	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 use constant for preference token	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-23	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-03-21	kiramt	JAL-2388 Made ViewportRanges final	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2435 copy font changes across split screen	blob \| commitdiff \| diff to current
2017-03-07	kiramt	JAL-2388 Missed commit	blob \| commitdiff \| diff to current
2017-03-06	kiramt	JAL-2388 Dependency tidy	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
2017-03-03	kiramt	JAL-2388 Initial removal of hidden cols/seqs out of...	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Reverted to previous	blob \| commitdiff \| diff to current
2017-03-01	kiramt	JAL-2388 Preliminary refactor check-in, does not compile	blob \| commitdiff \| diff to current
2017-02-28	kiramt	JAL-2388 First move of endRes etc out of AlignmentViewp...	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-21	kiramt	Merge branch 'develop' into features/JAL-2388OverviewWindow	blob \| commitdiff \| diff to current
2017-02-14	kiramt	JAL-2388 Removed unnecessary CommandListener interface...	blob \| commitdiff \| diff to current
2017-02-10	gmungoc	JAL-2371 small move of code, typo correction	blob \| commitdiff \| diff to current
2017-02-09	gmungoc	JAL-2371 ensure some colour scheme (may be None) is...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2385 more tests/bug fixes mostly for gui.SliderPane...	blob \| commitdiff \| diff to current
2017-01-27	gmungoc	JAL-2371 CollectionColourScheme renamed ResidueShader...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 getColour() renamed to getColourScheme(),...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 license header	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 new dispose() method to null references	blob \| commitdiff \| diff to current
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