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JAL-3417 prototype sdppred calculation as groovy script
[jalview.git]
/
src
/
jalview
/
gui
/
Desktop.java
2019-06-17
Jim Procter
JAL-3311 remove menus and documentation relating to...
tasks/JAL-3311_removeVamsasMenu
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commitdiff
2019-06-14
Jim Procter
JAL-3111 report build type and commit in stdout from...
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2019-05-27
Ben Soares
Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
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diff to current
2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
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diff to current
2019-05-22
Ben Soares
Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
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2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
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2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
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2019-04-05
Ben Soares
JAL-3130 This commit concentrates on the Mac OS X DMG...
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2019-04-04
Ben Soares
JAL-3130 trying to be Java 1.8 source compatible -...
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2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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2019-03-20
Ben Soares
JAL-3141 Disabled the 'Include Backup Files' checkbox...
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2019-03-19
Ben Soares
JAL-3130 remove some comments on quit. fix modules...
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2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
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2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
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2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
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2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
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2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
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2019-01-14
Ben Soares
JAL-3141 Added a 'Save Project as...' File menu item...
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2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
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2018-12-11
Ben Soares
JAL-3130 Turns out Quit/About/Preferences handlers...
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2018-12-03
Ben Soares
JAL-3130 Added flagged runtime 'Reflection' check on...
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2018-11-09
Ben Soares
JAL-1988 This fixes the Quit response when user cancels...
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2018-11-08
Ben Soares
JAL-1988 JAL-3130 Now we're in Java 11 land, using...
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2018-11-08
Ben Soares
JAL-1988 tidying, plus don't add Preferences to Tools...
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2018-11-08
Ben Soares
JAL-1988 JAVA 11 enabled version with Quit, Preferences...
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2018-11-05
Ben Soares
JAL-1988 Investigating...
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
blob
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commitdiff
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2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
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commitdiff
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2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
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2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
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2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
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2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
blob
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commitdiff
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2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
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2018-05-25
Jim Procter
JAL-1460 javadoc
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2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
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2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
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2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
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2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
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2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
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2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-12
gmungoc
JAL-2944 tidies for review comments
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2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
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2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_...
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2018-02-21
Jim Procter
JAL-2778 reinstate transparent windows to avoid ugly...
bug/JAL-2778again
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
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2018-01-10
kiramt
JAL-797: Added keybindings so that ctrl- or cmd-W close...
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2017-11-07
gmungoc
JAL-2069 update spike branch with latest
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2017-11-01
kiramt
JAL-2778 added setopaque again, and super.paintComponent(s)
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2017-10-31
kiramt
JAL-2756 update for new EBI https link
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-25
Jim Procter
JAL-2779 remove empty block and if statement
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2017-10-20
Jim Procter
JAL-2779 keep a reference to original Aqua manager...
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2017-10-18
Jim Procter
JAL-2779 switch order for updating the current alignmen...
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2017-10-18
Jim Procter
JAL-2779 remove dead code
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2017-10-18
Jim Procter
JAL-2779 hook in our own AquaInternalFrameManager when...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-15
Jim Procter
JAL-1625 ensure we don’t regress on JAL-20 - we always...
patch/JAL-2732
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2017-09-15
Jim Procter
JAL-2733 redraw after changing the memory status displa...
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2017-09-15
Jim Procter
JAL-1625 JAL-1900 preserve the original DesktopManager...
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2017-09-15
Jim Procter
JAL-1900 JAL-1625 back out OSX specific double buffer...
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2017-09-15
Jim Procter
JAL-1551 standard code formatting
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2017-09-15
Jim Procter
JAL-2732 force a redraw after resize/drag to clear...
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-06-02
tcofoegbu
JAL-2473 revised default minimum dimension for Alignmen...
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2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
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2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
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2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
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2017-05-16
kiramt
JAL-2536 Overview window sizing not subject to min...
bug/JAL-2536
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2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
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2017-04-10
tcofoegbu
JAL-2473 added improvement to apply default / custom...
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commitdiff
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2017-03-24
kiramt
JAL-2314 Tidy up
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commitdiff
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2017-03-23
kiramt
JAL-2314 Tweaks to stop thread sync issues
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2017-03-23
kiramt
JAL-2314 Tidies
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2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
blob
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commitdiff
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2017-01-25
gmungoc
JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
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2017-01-12
gmungoc
JAL-2344 now flagging formats as 'identifiable' instead...
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2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
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2016-12-15
kiramt
JAL-2316 Changes following review.
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2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
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2016-12-08
gmungoc
JAL-2359 add Window menu entry only after all danger...
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commitdiff
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2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChoose...
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commitdiff
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2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
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diff to current
2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
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diff to current
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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commitdiff
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2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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commitdiff
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2016-11-15
kiramt
JAL-2316 Moved url providers into own package
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commitdiff
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diff to current
2016-11-15
kiramt
JAL-2316 Refactoring of functionality to provide urls...
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-04
kiramt
JAL-2282 Better check for existing url links
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2016-11-04
kiramt
JAL-2282 Message box stays on top at Jalview open;...
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2016-11-03
kiramt
JAL-2282 If checkbox on warning dialog is unclicked...
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