git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-4386 Comparing secondary structure similarity directly with a basic
[jalview.git]
/
src
/
jalview
/
io
/
AppletFormatAdapter.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
blob
|
commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
blob
|
commitdiff
|
diff to current
2023-03-02
Ben Soares
JAL-629 Removal of unnecessary methods. Set pLTTD tempf...
blob
|
commitdiff
|
diff to current
2023-01-24
James Procter
JAL-629 need to delay call to AlignFile.parse() if...
blob
|
commitdiff
|
diff to current
2023-01-11
Ben Soares
JAL-629 refactoring TFType. Remove i18n identification...
blob
|
commitdiff
|
diff to current
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
blob
|
commitdiff
|
diff to current
2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
blob
|
commitdiff
|
diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
blob
|
commitdiff
|
diff to current
2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
blob
|
commitdiff
|
diff to current
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
blob
|
commitdiff
|
diff to current
2021-08-11
Jim Procter
JAL-2349 remove test code
blob
|
commitdiff
|
diff to current
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
blob
|
commitdiff
|
diff to current
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
blob
|
commitdiff
|
diff to current
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
blob
|
commitdiff
|
diff to current
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
blob
|
commitdiff
|
diff to current
2018-08-21
hansonr
mc_view references were MCview
blob
|
commitdiff
|
diff to current
2018-07-23
gmungoc
JAL-3056 suppress menu options, and repoint Help, for...
blob
|
commitdiff
|
diff to current
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
blob
|
commitdiff
|
diff to current
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
blob
|
commitdiff
|
diff to current
2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
blob
|
commitdiff
|
diff to current
2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
blob
|
commitdiff
|
diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
blob
|
commitdiff
|
diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
blob
|
commitdiff
|
diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
blob
|
commitdiff
|
diff to current
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
blob
|
commitdiff
|
diff to current
2017-05-31
tcofoegbu
Fixed failing tests
blob
|
commitdiff
|
diff to current
2017-02-10
Jim Procter
Merge branch 'develop' into spike/matrix_annot
blob
|
commitdiff
|
diff to current
2017-01-17
Jim Procter
JAL-2349 rename ContactMatrixTest to SeqDistanceContact...
blob
|
commitdiff
|
diff to current
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
blob
|
commitdiff
|
diff to current
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
blob
|
commitdiff
|
diff to current
2016-12-04
Jim Procter
JAL-2349 add dummy contact for both applet and application
blob
|
commitdiff
|
diff to current
2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
blob
|
commitdiff
|
diff to current
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
blob
|
commitdiff
|
diff to current
2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
blob
|
commitdiff
|
diff to current
2016-11-24
gmungoc
Further tweaks to get tests passing
blob
|
commitdiff
|
diff to current
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
blob
|
commitdiff
|
diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
blob
|
commitdiff
|
diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
blob
|
commitdiff
|
diff to current
2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
blob
|
commitdiff
|
diff to current
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
blob
|
commitdiff
|
diff to current
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
blob
|
commitdiff
|
diff to current
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
blob
|
commitdiff
|
diff to current
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
blob
|
commitdiff
|
diff to current
2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
blob
|
commitdiff
|
diff to current
2016-07-25
tcofoegbu
JAL-2157 bugfix for regression from commit 82a6c8e2e25b...
blob
|
commitdiff
|
diff to current
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
blob
|
commitdiff
|
diff to current
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
blob
|
commitdiff
|
diff to current
2016-07-18
gmungoc
fileFormat enum wip changes
blob
|
commitdiff
|
diff to current
2016-07-11
gmungoc
file format enum wip changes
blob
|
commitdiff
|
diff to current
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
blob
|
commitdiff
|
diff to current
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
blob
|
commitdiff
|
diff to current
2016-04-14
gmungoc
JAL-1270 JAL-653 use 'parse immediately' FeaturesFile...
blob
|
commitdiff
|
diff to current
2016-03-21
tcofoegbu
develop merge
blob
|
commitdiff
|
diff to current
2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
blob
|
commitdiff
|
diff to current
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
blob
|
commitdiff
|
diff to current
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
blob
|
commitdiff
|
diff to current
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
blob
|
commitdiff
|
diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
blob
|
commitdiff
|
diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
blob
|
commitdiff
|
diff to current
2015-08-18
tcofoegbu
JAL-1835 made BioJSON embedding to html exports configu...
blob
|
commitdiff
|
diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
blob
|
commitdiff
|
diff to current
2015-06-30
tcofoegbu
JAL-1641 round trip test/refactoring
blob
|
commitdiff
|
diff to current
2015-06-26
tcofoegbu
JAL-1641 fixed broken functionalities after refactor
blob
|
commitdiff
|
diff to current
2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
blob
|
commitdiff
|
diff to current
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
blob
|
commitdiff
|
diff to current
2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...
blob
|
commitdiff
|
diff to current
2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
blob
|
commitdiff
|
diff to current
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
blob
|
commitdiff
|
diff to current
2015-06-12
tcofoegbu
JAL-1641 refactor
blob
|
commitdiff
|
diff to current
2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
blob
|
commitdiff
|
diff to current
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
blob
|
commitdiff
|
diff to current
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
blob
|
commitdiff
|
diff to current
2015-05-13
tcofoegbu
Fixed some broken tests
blob
|
commitdiff
|
diff to current
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
blob
|
commitdiff
|
diff to current
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
blob
|
commitdiff
|
diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
blob
|
commitdiff
|
diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
blob
|
commitdiff
|
diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
blob
|
commitdiff
|
diff to current
2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
blob
|
commitdiff
|
diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
blob
|
commitdiff
|
diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
blob
|
commitdiff
|
diff to current
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
blob
|
commitdiff
|
diff to current
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
blob
|
commitdiff
|
diff to current
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
blob
|
commitdiff
|
diff to current
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
blob
|
commitdiff
|
diff to current
2014-10-15
Jim Procter
JAL-674 always try to extract secondary structure when...
blob
|
commitdiff
|
diff to current
2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
blob
|
commitdiff
|
diff to current
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
blob
|
commitdiff
|
diff to current
2014-09-26
darolmar
JAL-1355
blob
|
commitdiff
|
diff to current
2014-09-23
darolmar
JAL-1355
blob
|
commitdiff
|
diff to current
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
blob
|
commitdiff
|
diff to current
2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAd...
blob
|
commitdiff
|
diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
blob
|
commitdiff
|
diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
blob
|
commitdiff
|
diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
blob
|
commitdiff
|
diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
blob
|
commitdiff
|
diff to current
2014-06-03
Jim Procter
JAL-690 add .jvp as default jalview project filetype
blob
|
commitdiff
|
diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
blob
|
commitdiff
|
diff to current
next