Merge branch 'develop' into features/JAL-2110_crossRefDuplications
[jalview.git] / src / jalview / io / FastaFile.java
2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot...
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-01-05 jprocterJAL-727
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-01-29 jprocterFileParse object can be re-used to read different files...
2007-05-02 amwaterhouseAMSA input set padgaps true
2007-02-07 amwaterhouseFormatting
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-18 amwaterhouseAdd the last sequence before annotations
2007-01-18 amwaterhouse1.1 enabled
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2006-12-05 amwaterhouseSequence is char []
2006-08-21 amwaterhouseheader updated
2006-07-27 amwaterhouseremove unnecessary constructor
2006-03-24 amwaterhouseTrim line
2006-02-08 amwaterhouseReport invalid chars
2005-12-06 amwaterhouseafter merge
2005-06-30 amwaterhouseFormatting changes
2005-06-16 amwaterhousedont convert to uppercase
2005-06-14 jprocterArbitrary decision to keep friendly id name when readin...
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids
2005-04-08 amwaterhousereads fasta files from uniprot web page
2005-03-31 jprocterAdded a flag to control if the "/<seq_start>-<seq_end...
2005-01-15 jprocterbugfix for writing fasta file without gap characters.
2004-11-02 amwaterhouseJalview Imported Sources start