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[jalview.git] / src / jalview / io / FeaturesFile.java

2015-07-23	Jim Procter	JAL-1819 use Float.isNaN() to check for NaNs!	blob \| commitdiff
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-07	Jim Procter	JAL-653 basic GFF3 alignment import wrapper class	blob \| commitdiff \| diff to current
2015-06-06	Jim Procter	JAL-653 make sure dummy sequences created during GFF...	blob \| commitdiff \| diff to current
2015-06-06	Jim Procter	JAL-653 first stab at parsing GFF3 pragmas to support...	blob \| commitdiff \| diff to current
2015-06-06	Jim Procter	JAL-653 gff version number field	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-653 set the warningMessage for the file source...	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-653 GFF attributes parsing mechanism, with first...	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-653 trim initial tab in sequence feature ATTRIBUTES	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-653 allow dummy sequences to be created if a sequen...	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-1551 formatting	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1482 feature renderer and manipulation code refacto...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-02-13	jprocter	fix merge conflicts for finess on JAL-1140 (introduced...	blob \| commitdiff \| diff to current
2012-12-07	jprocter	formatting and error report cleanup	blob \| commitdiff \| diff to current
2012-12-07	jprocter	proxy commit for Anne Menard <menard.annec@gmail.com...	blob \| commitdiff \| diff to current
2012-12-04	jprocter	JAL-1140 - IO classes should only raise generic IOExcep...	blob \| commitdiff \| diff to current
2012-11-15	jprocter	source formatting	blob \| commitdiff \| diff to current
2012-11-15	jprocter	Merge branch 'develop' into menard	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-07-16	Anne Menard	Merge branch 'develop' of https://source.jalview.org...	blob \| commitdiff \| diff to current
2012-07-10	Anne Menard	v2	blob \| commitdiff \| diff to current
2012-07-05	Anne Menard	Add support RNAML format	blob \| commitdiff \| diff to current
2012-07-01	jprocter	JAL-1117 alleviate lock starvation	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-08-19	jprocter	JAL-908 JAL-701 refactored HTML escape/unescape code...	blob \| commitdiff \| diff to current
2011-01-21	jprocter	relaxed ID matching parameter JAL-753	blob \| commitdiff \| diff to current
2011-01-05	jprocter	JAL-727	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-15	jprocter	added colour by label to feature type colourspec and...	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-22	jprocter	non-positional feature export in gff and features file...	blob \| commitdiff \| diff to current
2010-03-26	jprocter	todo for graduated feature colours	blob \| commitdiff \| diff to current
2009-11-06	jprocter	only append score if it is not NaN	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-06-01	jprocter	added graduated colourscheme support for feature file	blob \| commitdiff \| diff to current
2009-03-31	jprocter	todo	blob \| commitdiff \| diff to current
2009-01-08	jprocter	fix broken parsing of non-positional features in GFF...	blob \| commitdiff \| diff to current
2008-12-19	jprocter	avoid null pointer exception when no features visible	blob \| commitdiff \| diff to current
2008-12-15	jprocter	added (and enabled) switch to store gff source string...	blob \| commitdiff \| diff to current
2008-11-12	jprocter	added todo regarding import of GFF2 key=value attributes	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-07-18	jprocter	resolve 1:many mappings from feature sequence ID to...	blob \| commitdiff \| diff to current
2008-04-21	jprocter	documented and refactored to facilitate headless featur...	blob \| commitdiff \| diff to current
2008-01-29	jprocter	FileParse object can be re-used to read different files...	blob \| commitdiff \| diff to current
2007-11-30	jprocter	case invariant matching of seqeunce feature to sequence...	blob \| commitdiff \| diff to current
2007-10-31	jprocter	added a quieter bailout for cases when the featuresFile...	blob \| commitdiff \| diff to current
2007-09-04	jprocter	gff parsing when no start or end position is defined.	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-12-19	amwaterhouse	description may be null	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-10-30	amwaterhouse	Append html	blob \| commitdiff \| diff to current
2006-10-18	amwaterhouse	parseDescriptionHTML	blob \| commitdiff \| diff to current
2006-08-29	amwaterhouse	No stacktrace	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-18	amwaterhouse	Jalview features format adds links as hrefs	blob \| commitdiff \| diff to current
2006-07-28	amwaterhouse	output source in gff file	blob \| commitdiff \| diff to current
2006-07-27	amwaterhouse	remove unnecessary constructor	blob \| commitdiff \| diff to current
2006-07-07	amwaterhouse	make 1.1 compatible	blob \| commitdiff \| diff to current
2006-06-23	amwaterhouse	Parse HTML links from jalview features file	blob \| commitdiff \| diff to current
2006-06-09	amwaterhouse	Annotation/feature exporter	blob \| commitdiff \| diff to current

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