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[jalview.git] / src / jalview / io / vamsas /
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-18 James ProcterJAL-4134 properly specify BinaryNode as a typed generic... tree | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... tree | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... tree | commitdiff
2022-02-11 Ben SoaresJLogger loglevel check on whether to call the actual... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... tree | commitdiff
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text... tree | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... tree | commitdiff
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV" tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... tree | commitdiff
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-06-13 jprocterjavatidy tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-02-17 jprocterclassCast exception - attempting to update registry... tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2009-06-19 jprocterimplementation error warning todo tree | commitdiff
2009-06-19 jprocterdebug and cyclefix for dbrefs with embedded sequences tree | commitdiff
2009-06-19 jprocterjavadoc and datastoreitem registry support for binding... tree | commitdiff
2009-06-19 jproctermore efficient synchronized methods tree | commitdiff
2009-06-12 jproctersynching of all db references and sequence features tree | commitdiff
2009-06-12 jprocterprevent dbref->map->to->datasetsequence->dbref-> type... tree | commitdiff
2009-06-12 jprocterreinstate links on features tree | commitdiff
2009-06-12 jprocterdatastore registration and class cast exception fix tree | commitdiff
2009-06-12 jprocterprevent and keep track of which objects handling elemen... tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2008-11-12 jprocterrefactored to propery separate addToDocument,addFromDoc... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2007-12-21 jprocterbugfixes tree | commitdiff
2007-10-24 jprocternull pointer exception and warning for update of tree tree | commitdiff
2007-09-28 jprocterbetter support for TreeNode binding tree | commitdiff
2007-09-25 jprocterascii file tree | commitdiff
2007-09-25 jprocterbeginning of vamsas/local object synchronization patter... tree | commitdiff
2007-09-18 jprocterfix class-cast exception and added beginnings of DBRef... tree | commitdiff
2007-09-07 jprocterMaps are usually added to DbRefs which are added to... tree | commitdiff
2007-08-30 jproctersequenceMappings go on boh datasets involved in a mappi... tree | commitdiff
2007-08-30 jprocterimproved vamsas treenode node binding support tree | commitdiff
2007-08-23 jprocterproper vamsas style binding of alignment sequence objec... tree | commitdiff
2007-07-25 jprocterbetter vamsas tree io (for when there are no nodemappings) tree | commitdiff
2007-07-13 jprocterrefactored form of vamsas document interaction code tree | commitdiff
2007-06-17 jproctervamsas-client-1.2 schema (mappings and Treenodes) and... tree | commitdiff