JAL-4298 comment markers
[jalview.git] / src / jalview / io / vamsas /
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-05-22 James ProcterJAL-1551 spotless
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-18 James ProcterJAL-4134 properly specify BinaryNode as a typed generic...
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum...
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Ben SoaresMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu...
2022-02-11 Ben SoaresJLogger loglevel check on whether to call the actual...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no...
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with...
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV"
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-17 jprocterclassCast exception - attempting to update registry...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-19 jprocterimplementation error warning todo
2009-06-19 jprocterdebug and cyclefix for dbrefs with embedded sequences
2009-06-19 jprocterjavadoc and datastoreitem registry support for binding...
2009-06-19 jproctermore efficient synchronized methods
2009-06-12 jproctersynching of all db references and sequence features
2009-06-12 jprocterprevent dbref->map->to->datasetsequence->dbref-> type...
2009-06-12 jprocterreinstate links on features
2009-06-12 jprocterdatastore registration and class cast exception fix
2009-06-12 jprocterprevent and keep track of which objects handling elemen...
2009-06-08 jprocterapply gpl development license
2008-11-12 jprocterrefactored to propery separate addToDocument,addFromDoc...
2008-09-04 jproctermerge from 2_4_Release branch
2007-12-21 jprocterbugfixes
2007-10-24 jprocternull pointer exception and warning for update of tree
2007-09-28 jprocterbetter support for TreeNode binding
2007-09-25 jprocterascii file
2007-09-25 jprocterbeginning of vamsas/local object synchronization patter...
2007-09-18 jprocterfix class-cast exception and added beginnings of DBRef...
2007-09-07 jprocterMaps are usually added to DbRefs which are added to...
2007-08-30 jproctersequenceMappings go on boh datasets involved in a mappi...
2007-08-30 jprocterimproved vamsas treenode node binding support
2007-08-23 jprocterproper vamsas style binding of alignment sequence objec...
2007-07-25 jprocterbetter vamsas tree io (for when there are no nodemappings)
2007-07-13 jprocterrefactored form of vamsas document interaction code
2007-06-17 jproctervamsas-client-1.2 schema (mappings and Treenodes) and...