source.jalview.org Git - jalview.git/history - src/jalview/schemes/ResidueColourScheme.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / schemes / ResidueColourScheme.java

2019-01-04	gmungoc	JAL-3180 fix By Annotation selection state in colour...	blob \| commitdiff
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-18	Jim Procter	Merge branch 'feature/2588' into merge/develop_feature...	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-06-28	kiramt	JAL-2588 Gap colour scheme now shown in overview	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme	blob \| commitdiff \| diff to current
2017-06-06	gmungoc	JAL-2589 correct colour for Gap in Score and User Defin...	blob \| commitdiff \| diff to current
2017-02-01	gmungoc	JAL-2371 (slight!) simplification of isApplicableTo()	blob \| commitdiff \| diff to current
2017-01-09	gmungoc	JAL-2371 remove ColourSchemeI.findColour(c), pure inter...	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	JAL-2371 slight simplification of findColour overrides	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	Merge branch 'features/JAL-2360colourSchemeApplicabilit...	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	JAL-2360 findColour() with no args removed from ColourS...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-29	gmungoc	JAL-2630 first pass groovy colour scheme (with slight...	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-21	gmungoc	JAL-2360 ColourMenuHelper now builds and selects items...	blob \| commitdiff \| diff to current
2016-12-20	gmungoc	JAL-2360 ColourSchemes holds configured schemes, AlignF...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 added UserColourScheme.toAppletParameter+test...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 refactoring for JalviewColourScheme enum,	blob \| commitdiff \| diff to current
2016-12-13	gmungoc	JAL-2360 code formatting only and if-else changed to...	blob \| commitdiff \| diff to current
2016-11-17	gmungoc	JAL-98 ProfilesI container for profiles for columns	blob \| commitdiff \| diff to current
2016-11-02	gmungoc	JAL-98 ProfileI interface for Profile	blob \| commitdiff \| diff to current
2016-11-02	gmungoc	JAL-98 Profile and ResidueCount moved from analysis...	blob \| commitdiff \| diff to current
2016-10-27	gmungoc	JAL-98 refactor bleachColour() to ColorUtils	blob \| commitdiff \| diff to current
2016-10-26	gmungoc	JAL-2286 javadoc, refactor, unit tests for threshold...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-25	gmungoc	JAL-98 field comments updated	blob \| commitdiff \| diff to current
2016-10-03	gmungoc	JAL-98 use Profile to store consensus, ResidueCount...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-06-29	jprocter	JAL-1065 JAL-1066 allow different lookup tables for...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-09-10	jprocter	fix null pointer exception when using blosum colourscheme	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	check conservation length	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-30	amwaterhouse	consensusColouring never used	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-11-28	amwaterhouse	CurrentColour must not be accessed by multiple sequence...	blob \| commitdiff \| diff to current
2006-11-28	amwaterhouse	CurrentColour must not be accessed by multiple sequence...	blob \| commitdiff \| diff to current
2006-11-09	amwaterhouse	Check conensus is not null	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	aaIndex replaces aaHash	blob \| commitdiff \| diff to current
2006-10-06	amwaterhouse	Set consensus as hashtble[]	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-02-09	amwaterhouse	If conservation is zero, colour is white	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Conservation colouring does what it should always have...	blob \| commitdiff \| diff to current
2005-09-08	amwaterhouse	If vconsensus is null, return	blob \| commitdiff \| diff to current
2005-08-22	amwaterhouse	Conservation colour scheme is no more	blob \| commitdiff \| diff to current
2005-08-18	amwaterhouse	Use aa index for aboveThreshold as well as colour index	blob \| commitdiff \| diff to current
2005-08-15	amwaterhouse	Remove null check	blob \| commitdiff \| diff to current
2005-08-15	amwaterhouse	Percentage precalculated in aafrequency	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-25	amwaterhouse	all can threshold	blob \| commitdiff \| diff to current
2005-04-29	amwaterhouse	just tidying up unused imports	blob \| commitdiff \| diff to current
2005-04-15	amwaterhouse	consensus held in residueColour	blob \| commitdiff \| diff to current
2004-12-15	amwaterhouse	isGap method implemented in utils, and optimized	blob \| commitdiff \| diff to current
2004-12-14	amwaterhouse	Getcolours is not needed ????	blob \| commitdiff \| diff to current
2004-12-03	amwaterhouse	Space char added	blob \| commitdiff \| diff to current
2004-11-16	amwaterhouse	remove jbgui import	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

RSS Atom