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Merge branch 'develop' into trialMerge
[jalview.git] / src / jalview / schemes /
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-26 gmungocJAL-2286 modal residue check + commenting tree | commitdiff
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... tree | commitdiff
2016-10-25 gmungocJAL-2286 use constant for fixed colours tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-25 gmungocJAL-98 field comments updated tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering... tree | commitdiff
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-20 gmungocMerge branch 'JAL-1956_featureStyles' into features... tree | commitdiff
2016-02-20 gmungocJAL-2016 first draft of pre-set feature colour scheme tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2015-12-22 gmungocJAL-1421 parameterised map constructor used tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... tree | commitdiff
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... tree | commitdiff
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... tree | commitdiff
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... tree | commitdiff
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with... tree | commitdiff
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting tree | commitdiff
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix... tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 register feature similarity model tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository... tree | commitdiff
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence tree | commitdiff
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. tree | commitdiff
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton... tree | commitdiff
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation... tree | commitdiff
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour... tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present tree | commitdiff
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-04 Jim ProcterJAL-952 fixed unresolved conflict breaking build tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation... tree | commitdiff
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop tree | commitdiff
2014-05-01 Jim Procterremove todo tree | commitdiff
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on... tree | commitdiff
2014-05-01 Jim Procterjavadoc tree | commitdiff
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow... tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop tree | commitdiff
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list... tree | commitdiff
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices' tree | commitdiff
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin... tree | commitdiff
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop tree | commitdiff
2014-04-25 Jim Procterfix for JAL-1268 tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim Procteravoid potential NPE tree | commitdiff
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