JAL-2416 allow space in score matrix name
[jalview.git] / src / jalview / util /
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1...
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-11 gmungocJAL-1705 javadoc added only
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id...
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon
2016-02-12 gmungocMerge branch 'develop' into
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing...
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug...
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy
2016-01-11 gmungocJAL-1989 map hidden column ranges
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_...
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from...
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge...
2015-12-03 gmungocJAL-653 handle reverse strand mappings also
2015-12-02 gmungocJAL-1827 added overloaded method for convenience
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-08 Jim ProcterJAL-1894 add licensing
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-24 gmungocJAL-1905 parse url including & correctly
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created...
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame...
2015-07-01 gmungocJAL-1799 deduct more space for decorators on Windows
2015-06-28 Jim ProcterJAL-1705 refactored code for dbsource reggae validator...
2015-06-04 gmungoctoString method added to aid viewing in the debugger
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to...
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-04-23 gmungocJAL-845 only 'follow' sort command in coding complement...
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop)
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-03-02 Charles Ofoegbuhouse keeping
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now...
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi...
2014-11-12 Charles Ofoegbuhouse-keeping
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs...
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
2014-09-23 darolmarJAL-1355
2014-09-18 gmungocJAL-1360 Javadoc/JUnit
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1485
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into develop
2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Securi...
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
next