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JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
/
jalview
/
workers
/
2023-10-19
Ben Soares
JAL-4305 Isolate and unify the Jalview object from...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-06-08
James Procter
JAL-4196 make very sure we avoid CME by defensively...
tree
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commitdiff
2023-06-06
James Procter
JAL-4160 JAL-4195 wait around until alignFrame calculat...
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-05
gmungoc
Merge branch 'features/JAL-2446NCList' into
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2228 java 1.7 compliance
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always create zero score annotations, since...
tree
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commitdiff
2017-06-02
Jim Procter
JAL-2228 always set minimum for count to zero for annot...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient...
tree
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commitdiff
2017-03-16
Jim Procter
Merge branch 'merges/develop_JAL2295setChimeraAttribute...
tree
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commitdiff
2017-03-15
gmungoc
Merge branch 'develop' into bug/JAL-2436featureRenderer...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Checks on conservation thread in case we are...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Removal of NPE in conservation thread when...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-02-28
kiramt
JAL-2426 Removal of NPE in conservation thread when...
tree
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commitdiff
2017-02-28
kiramt
JAL-2426 Checks on conservation thread in case we are...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed ColumnCounterI, finessed recalc of...
tree
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commitdiff
2017-01-18
gmungoc
JAL-2228 removed FeatureCounterI in favour of FeatureSe...
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
tree
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commitdiff
2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
tree
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commitdiff
2016-11-18
gmungoc
JAL-98 with the two types missing from last commit...
bug/JAL-98consensusMemory
tree
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commitdiff
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
tree
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commitdiff
2016-11-10
Jim Procter
JAL-2228 patch for Java 7 compatibility
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-09-25
Jim Procter
JAL-2228 base interface for FeatureCounters and factory...
tree
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commitdiff
2016-09-25
Jim Procter
JAL-2228 interface and worker to allow multiple feature...
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-08-07
Jim Procter
JAL-2068 add the worker to the currently displayed...
patch/JAL-2068_JAL-2169_multiviewannotworker
tree
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commitdiff
2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
tree
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commitdiff
2016-07-20
gmungoc
JAL-2068 AnnotationWorker create/update annotation...
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 small refactor to reuse shared method
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 update rather than recreate AlignmentAnnotatio...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2068 scale annotation display character to width...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-05-03
gmungoc
JAL-2068 minimised jalview.gui imports, test for remove...
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-26
gmungoc
JAL-2068 deleting user-defined annotation removes the...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 framework and example scripts for pluggable...
tree
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commitdiff
2016-04-22
gmungoc
JAL-2068 redundant implements clauses removed
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-05
Jim Procter
JAL-1081 JAL-891 don’t overwrite global colour scheme...
tree
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commitdiff
2015-09-05
Jim Procter
JAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1681 work around ConcurrentModificationException...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-10-03
gmungoc
JAL-1506 correct exit on close align frame
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-01
Jim Procter
JAL-961 configure conservation worker from alignment...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-961 store result of conservation analysis worker...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-09-02
Jim Procter
JAL-1373 pass size of sequence set to consensus renderi...
tree
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commitdiff
2012-11-15
jprocter
source formatting
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-08-14
Anne Menard
last version stay many bugs ..
tree
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commitdiff
2012-06-19
jprocter
JAL-961 JAL-975 extend api to support removal of worker...
tree
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commitdiff
2012-06-14
jprocter
JAL-1115 trap exception arising from race condition...
tree
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commitdiff
2012-06-14
jprocter
JAL-961 potentially helpful println statements when...
tree
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commitdiff
2012-06-12
jprocter
JAL-961, JAL-1115 - pending test to ensure only one...
tree
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commitdiff
2012-06-07
jprocter
javatidy
tree
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commitdiff
2012-05-31
jprocter
javatidy
tree
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commitdiff
2011-11-15
jprocter
todo
tree
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commitdiff
2011-11-08
jprocter
fix NPE when no annotation workers present ...
tree
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commitdiff
2011-11-03
jprocter
(JAL-812,JAL-811) - generic test for 'calculation invol...
tree
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commitdiff
2011-11-03
jprocter
(JAL-811) - workers hold references to generated annota...
tree
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commitdiff
2011-10-28
jprocter
(JAL-885 JAL-580) ignore invalid RNA structure lines
tree
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commitdiff
2011-10-28
jprocter
(JAL-885,JAL-580) structure consensus should only be...
tree
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commitdiff
2011-10-27
jprocter
(JAL-961) refactored consensus and rna structure consen...
tree
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commitdiff
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