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Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of https://source.jalview.org/git...
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Uniprot.java
2018-11-08
gmungoc
JAL-3116 better unmarshalling of EMBL/Uniprot XML
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
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2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
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2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
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2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
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2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
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2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
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2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
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2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
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2017-11-13
Jim Procter
JAL-2758 typo
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2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-29
Jim Procter
JAL-2748 formatting
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2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
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2017-09-29
Jim Procter
JAL-2748 formatting
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2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
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2017-05-24
gmungoc
JAL-2506 relocate Uniprot binding classes, bind to...
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2017-05-16
gmungoc
JAL-2505 set SequenceFeature group in constructor
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2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
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2016-10-03
Jim Procter
JAL-2210 use addDBRef to ensure normalisation (just...
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2016-10-03
Jim Procter
JAL-2210 need to add both transcript and product, and...
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2016-10-03
Jim Procter
JAL-2210 JAL-2232 remove version number from ENACDS...
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2016-10-02
Jim Procter
JAL-2210 remove ENSEMBL from protein DB list:
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2016-09-28
Jim Procter
JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
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2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
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2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
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2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
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2016-03-11
gmungoc
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
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2016-02-12
gmungoc
JAL-1270 remove trailing space + test
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2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
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2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
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2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
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2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-01-18
jprocter
JAL-1238 tier index indicating distance of a source...
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2012-11-08
jprocter
tidy imports
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-04
jprocter
avoid importing the mapping every time we parse a unipr...
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-09-27
jprocter
apply version 2.7 copyright
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-04-30
jprocter
jalview 2.5 release banner
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2009-06-19
jprocter
regex validator for uniprot
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diff to current
2009-06-08
jprocter
apply gpl development license
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2008-12-19
jprocter
wsdbfetch parameter change again (uniprotkb is dbname...
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2008-12-04
jprocter
minimise exceptions for bad uniprot ids
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-26
jprocter
pdb xrefs added as dbrefs and as PDB file links
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2008-08-15
jprocter
xrefs retrieved from Uniprot
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2008-08-01
jprocter
updated jalview version of dasobert 1.53e client and...
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2008-07-31
jprocter
quick fix for the new uniprot name schema - description...
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2008-05-26
jprocter
Uniprot is not actually a multi-acc capable source...
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2007-12-21
jprocter
uniprotxml format comment (ebi changed service parameter)
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2007-12-21
jprocter
sequence db fetcher and db reference validation/annotat...
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2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
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diff to current
2007-11-16
jprocter
refactor abstract sequence fetching and DBSource machin...
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2007-09-10
jprocter
ensure dbrefs are added to dataset sequence.
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2007-07-13
jprocter
new DBRef management and generalised source and entry...
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diff to current