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JAL-4199 Fix cancel button not appearing on progress bar
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
2023-01-20
Jim Procter
JAL-4102 update 2.12 from 2.11.2.6 patch release -...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
tree
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commitdiff
2023-01-06
Jim Procter
Merge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha...
tree
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commitdiff
2022-12-14
Jim Procter
Merge branch 'develop' into update_212_Dec_merge_with_2...
tree
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commitdiff
2022-11-30
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
tree
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commitdiff
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
tree
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commitdiff
2022-11-21
Jim Procter
Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...
tree
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commitdiff
2022-10-11
Jim Procter
JAL-4073 fix PEBCAK failure
tree
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commitdiff
2022-10-06
Jim Procter
stable url for PFAM retrieval via interpro api :) JAL...
tree
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commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2022-10-06
Jim Procter
JAL-4073 Pfam retrieval now works via a template includ...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-17
Jim Procter
JAL-3959 add key retrieval urls that support CORS neede...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2022-01-28
Jim Procter
Merge branch 'merge/develop_JAL-3725' into develop
tree
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commitdiff
2022-01-26
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-12-13
Jim Procter
JAL-3855 JAL-3829 don’t need to make up alphafold model...
tree
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commitdiff
2021-12-08
Jim Procter
JAL-3929 URLencode pdbid to remove problematic characte...
tree
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commitdiff
2021-10-01
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-09-29
Jim Procter
JAL-3884 squish alarming but harmless errors when unipr...
tree
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commitdiff
2021-09-23
Jim Procter
JAL-3692 JAL-3861 remove extra call to .parse() so...
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 JAL-3855 ignore case when detecting alphafold ID
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
arngucci
JAL-3829_spike minor changes
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 forgot to add in the dummy 3d-beacons db proxy
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 ALPHAFOLD database source based on the PDB...
tree
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commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
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commitdiff
2020-10-28
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2020-08-05
gmungoc
JAL-3692 parse multiline feature qualifiers and escaped...
tree
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commitdiff
2020-08-05
gmungoc
JAL-3692 parse multiline feature qualifiers and escaped...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 refactor/complete parsing, more unit test...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-07-27
gmungoc
JAL-2656 JAL-3615 check response headers to test for...
tree
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commitdiff
2020-07-27
gmungoc
JAL-3615 used gzip endpoints for Pfam and Rfam
tree
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commitdiff
2020-07-27
gmungoc
JAL-3692 refactor/complete parsing, more unit test...
tree
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commitdiff
2020-07-21
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-07-02
gmungoc
JAL-2656 JAL-3615 check response headers to test for...
tree
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commitdiff
2020-07-02
gmungoc
JAL-3615 used gzip endpoints for Pfam and Rfam
tree
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commitdiff
2020-06-30
gmungoc
JAL-3446 unused imports removed
tree
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commitdiff
2020-06-01
BobHanson
JAL-3626 Regex optimization from JAL-3253-applet; also...
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-11-08
gmungoc
JAL-3116 better unmarshalling of EMBL/Uniprot XML
tree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-08-24
hansonr
JAL-3026 GD#107,128,130,139 build-site.xml
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
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commitdiff
2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2748 formatting
tree
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commitdiff
2017-09-29
Jim Procter
JAL-2745 JAL-2748 direct download of XML from uniprot.org
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-08-22
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 Rfam download suffix
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2426 JAL-1270 report Xfam download URL used if...
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 raw stockholm download URLs
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 remove overloaded getSequenceRecords method...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-05-24
gmungoc
JAL-2506 relocate Uniprot binding classes, bind to...
tree
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commitdiff
2017-05-16
gmungoc
JAL-2505 set SequenceFeature group in constructor
tree
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commitdiff
2017-03-22
kiramt
JAL-2461 Removed DAS error stack trace, updated message
tree
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commitdiff
2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
tree
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commitdiff
2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
features/JAL-2344FileFormatI
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
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