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Merge branch 'improvement/JAL-3280_Migrate_the_VersionChecker_service_to_build_proper...
[jalview.git]
/
src
/
2020-09-02
Ben Soares
JAL-3280 Test for remote release build_properties file...
tree
|
commitdiff
2020-09-01
Ben Soares
JAL-3280 fixes after CR-JAL-241. Now only checking...
tree
|
commitdiff
2020-08-31
Ben Soares
JAL-3280 Pass appbase and appdir from getdown to jalvew...
tree
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commitdiff
2020-08-31
Jim Procter
JAL-3732 - sequences can be moved up/down in cursor...
tree
|
commitdiff
2020-08-27
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
tree
|
commitdiff
2020-08-25
Jim Procter
JAL-3671 hardwire log4j.root logger to INFO to supress...
tree
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commitdiff
2020-08-21
Jim Procter
JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
tree
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commitdiff
2020-08-18
gmungoc
JAL-3692 parse multiline CDS location correctly
tree
|
commitdiff
2020-08-17
Jim Procter
Merge branch 'patch/JAL-3691_No_score_models_available...
tree
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commitdiff
2020-08-17
Jim Procter
Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...
tree
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commitdiff
2020-08-17
Jim Procter
Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...
tree
|
commitdiff
2020-08-17
Jim Procter
Merge branch 'patch/JAL-3597_for_Release_2_11_1_Branch...
tree
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commitdiff
2020-08-14
Ben Soares
JAL-3676 More explicit tooltip about resetting log...
tree
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commitdiff
2020-08-13
gmungoc
JAL-3597 additional references nulled, bug in test...
tree
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commitdiff
2020-08-12
Ben Soares
JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
tree
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commitdiff
2020-08-12
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
tree
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commitdiff
2020-08-11
Jim Procter
JAL-3673 make sure font metrics are updated if dealing...
tree
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commitdiff
2020-08-11
Jim Procter
Merge branch 'bug/JAL-2983negativeSliderMin' into relea...
tree
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commitdiff
2020-08-11
gmungoc
JAL-3371 more fine-grained slider; set Param slider...
tree
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commitdiff
2020-08-10
gmungoc
JAL-3490 match count independent of contiguous matches...
patch/Release_2_11_1_Branch_patch_JAL-3490
tree
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commitdiff
2020-08-10
Jim Procter
JAL-3691 toUpperCase(Locale.ROOT) for all standard...
tree
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commitdiff
2020-08-10
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch' into...
tree
|
commitdiff
2020-08-10
Jim Procter
JAL-3628 JAL-3708 call Cache.initLogger() before using...
tree
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commitdiff
2020-08-05
Ben Soares
JAL-3691 Changed .toUppoerCase().startsWith(...) to...
tree
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commitdiff
2020-08-05
Jim Procter
Merge branch 'patch/JAL-3692enaEndpointFlatfile' into...
tree
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commitdiff
2020-08-05
gmungoc
JAL-3692 parse multiline feature qualifiers and escaped...
tree
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commitdiff
2020-08-05
Jim Procter
Merge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
tree
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commitdiff
2020-08-04
Ben Soares
JAL-3477 Added -help text for jvmmempc and jvmmemmax...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 set CDS /product as EMBLCDSPROTEIN description
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 refactor/complete parsing, more unit test...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 parse DE for description, and other refactoring...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote...
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
|
commitdiff
2020-07-31
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
tree
|
commitdiff
2020-07-29
Jim Procter
Merge branch 'bug/JAL-2983negativeSliderMin' into relea...
tree
|
commitdiff
2020-07-29
Jim Procter
JAL-3371 JAL-2983 don't modify 'extent' of slider ...
tree
|
commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise non-HTTP URI input streams as gzippe...
tree
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commitdiff
2020-07-28
Jim Procter
JAL-2656 recognise Gzipped file input streams by their...
tree
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commitdiff
2020-07-27
gmungoc
JAL-2656 JAL-3615 check response headers to test for...
tree
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commitdiff
2020-07-27
gmungoc
JAL-3615 used gzip endpoints for Pfam and Rfam
tree
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commitdiff
2020-07-27
Jim Procter
Merge branch 'bug/JAL-2983negativeSliderMin' into relea...
tree
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commitdiff
2020-07-27
gmungoc
JAL-3621 corrected sequence feature sort and test
tree
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commitdiff
2020-07-27
gmungoc
JAL-3621 update to intervalstore v1.1
tree
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commitdiff
2020-07-27
Jim Procter
JAL-3697 show total number of features not shown
tree
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commitdiff
2020-07-27
Jim Procter
JAL-3696 log the error message from the exception to...
tree
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commitdiff
2020-07-08
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
tree
|
commitdiff
2020-07-08
Ben Soares
Merge branch 'task/JAL-3609_HiDPI_support_in_java'...
tree
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commitdiff
2020-07-07
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
tree
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commitdiff
2020-07-07
Ben Soares
JAL-3608 ex stacktraces now go to Cache.log.debug
tree
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commitdiff
2020-07-07
Ben Soares
JAL-3628 System.out/err -> Cache.log.info/error
tree
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commitdiff
2020-07-07
Ben Soares
Merge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
tree
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commitdiff
2020-07-07
Ben Soares
JAL-3628 System.out/err -> Cache.log.info/error
tree
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commitdiff
2020-07-07
Ben Soares
JAL-3628 Fixed oddly worded and non-formatted error...
tree
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commitdiff
2020-07-06
Ben Soares
JAL-3676 improvement for visual selection of console...
tree
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commitdiff
2020-07-06
Ben Soares
JAL-3628 improvement for visual selection of console...
tree
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commitdiff
2020-07-06
Ben Soares
JAL-3628 Fix for slightly incorrect boolean usage to...
tree
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commitdiff
2020-07-06
Ben Soares
JAL-3628 Even more Cache.log.debug statements
tree
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commitdiff
2020-07-04
Jim Procter
Merge branch 'merge/JAL-3609_and_JAL-3608' into release...
tree
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commitdiff
2020-07-04
Jim Procter
JAL-3638 don’t move cursor to next gap after moving...
tree
|
commitdiff
2020-07-04
Jim Procter
JAL-3680 check whether a sequence selection exists...
tree
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commitdiff
2020-07-04
Jim Procter
JAL-3638 shift+arrow keys in cursor mode jumps cursor...
tree
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commitdiff
2020-07-04
Ben Soares
JAL-3628 More Cache.log.debug statements
tree
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commitdiff
2020-07-02
Ben Soares
JAL-3676 code review -- added non-listed Level into...
tree
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commitdiff
2020-07-01
Ben Soares
Merge branch 'task/JAL-3608_property_set_laf_and_tests_...
tree
|
commitdiff
2020-06-30
Ben Soares
JAL-3676 Added Log Level ComboBox and Copy to Clipboard...
tree
|
commitdiff
2020-06-29
Jim Procter
JAL-3493 clear search highlights when escape/deselect all
tree
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
tree
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commitdiff
2020-06-24
Ben Soares
JAL-3667 Fixed single backupfile error deleting the...
tree
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commitdiff
2020-06-21
Ben Soares
JAL-3609 Report when scale setting used.
tree
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commitdiff
2020-06-21
Ben Soares
JAL-3609 New auto-scale 'formula' for linux HiDPI....
tree
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commitdiff
2020-06-16
Ben Soares
JAL-3608 non-JS cherry-pick
tree
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commitdiff
2020-06-16
Jim Procter
Merge branch 'bug/JAL-3561_translatefileformats' into...
patch/JAL-3561_JAL-3660_fileformatexport_CLI
tree
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commitdiff
2020-06-16
Jim Procter
JAL-3660 JAL-3561 output alignment as requested file...
bug/JAL-3561_translatefileformats
tree
|
commitdiff
2020-06-16
Ben Soares
JAL-3608 formatting save only
tree
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commitdiff
2020-06-16
Ben Soares
JAL-3608 formatting save only
tree
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commitdiff
2020-06-15
Ben Soares
JAL-3628 Changed other calls to renameTo to use BackupF...
tree
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commitdiff
2020-06-08
Ben Soares
JAL-3628 Changed all file1.renameTo(file2) calls to...
tree
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commitdiff
2020-05-22
soares
JAL-3609 corrected maxdimension to mindimension. Adjust...
tree
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commitdiff
2020-05-20
Ben Soares
JAL-3609 removed debugging prints
tree
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commitdiff
2020-05-19
Ben Soares
JAL-3609 changed property names to something more palat...
tree
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commitdiff
2020-05-19
Ben Soares
JAL-3609 system properties to force a scale, or automat...
tree
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commitdiff
2020-05-19
Ben Soares
JAL-3609 Added a -DforceHiDPISetting=true option mainly...
tree
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commitdiff
2020-05-18
gmungoc
JAL-3613 remove debug code committed in error
tree
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commitdiff
2020-05-15
Ben Soares
JAL-3609 HiDPI scale setting done via system prop in...
tree
|
commitdiff
2020-05-01
gmungoc
Merge branch 'bug/JAL-3613emblCDSTracking' into release...
tree
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commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
|
commitdiff
2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
Release_2_11_1_0
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'develop' into releases/Release_2_11_1_Branch
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3567virtualFeatureCoordinates...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-367 code tidy
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3567 translated rather than imputed peptide
tree
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commitdiff
2020-04-17
gmungoc
JAL-3567 unit tests for linked feature tooltips
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 adjust layout of linked feature report, unit...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 added 'imputed by Jalview' to protein conseque...
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'develop' into releases/Release_2_11_1_Branch
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
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commitdiff
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