| 2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
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| 2021-09-21 |
Jim Procter | JAL-3829 ignore the fake ID generated when a PDB format... |
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| 2021-09-17 |
Jim Procter | JAL-2226 new method to search for annotation matching... |
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| 2021-09-16 |
Jim Procter | JAL-3794 new test for recognition of protein or DNA... |
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| 2021-09-03 |
Jim Procter | JAL-3863 promote non-canonical version of dbref to... |
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| 2021-09-03 |
Jim Procter | JAL-3863 passing test to verify a uniprot accession... |
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| 2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
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| 2019-06-10 |
gmungoc | JAL-3296 ensure sequence cursor reset when sequence... bug/JAL-3296changeStartInvalidateCursor |
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| 2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2019-03-01 |
gmungoc | Merge branch 'feature/intervalStoreJ' into merge/JAL... |
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| 2019-03-01 |
gmungoc | JAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ |
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| 2019-02-04 |
hansonr | Test suite try/catch reverted |
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| 2019-01-29 |
hansonr | test package fix for List<DBRefEntry> DBrefs (untested) |
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| 2018-12-17 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
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| 2018-11-29 |
gmungoc | JAL-3140 NCList now via IntervalStore library |
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| 2018-05-11 |
gmungoc | JAL-2986 additional asserts for SequenceCursor updates |
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| 2018-05-11 |
gmungoc | JAL-2986 failing test added |
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| 2018-01-22 |
kiramt | JAL-2579 Moved locateVisibleStartOfSequence to Sequence... |
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| 2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
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| 2017-11-21 |
kiramt | Merge branch 'develop' into feature/JAL-2759 |
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| 2017-11-13 |
gmungoc | Merge branch 'bug/JAL-2829deleteCharsWithGaps' into |
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| 2017-11-10 |
gmungoc | JAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps |
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| 2017-11-10 |
gmungoc | JAL-2829 unit tests for failing cases |
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| 2017-11-08 |
kiramt | Merge branch 'develop' into feature/JAL-2759 |
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| 2017-11-06 |
Jim Procter | Merge branch 'bug/JAL-2541cutRelocateFeatures' into... |
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| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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| 2017-10-23 |
Jim Procter | Merge branch 'bug/JAL-2682parseId' into develop |
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| 2017-10-11 |
gmungoc | JAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-21 |
kiramt | JAL-2674 unit test for gapBitSet |
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| 2017-09-14 |
gmungoc | JAL-2541 length check in deleteChars (redoing lost... |
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| 2017-09-14 |
gmungoc | JAL-2541 working Cut/Undo with feature relocation |
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| 2017-08-23 |
gmungoc | JAL-2481 a smidgin more test coverage of findFeatures |
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| 2017-08-23 |
gmungoc | JAL-2682 non-regex sequence id parsing, and tests added |
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| 2017-06-24 |
gmungoc | JAL-2547 fix case of gap followed by enclosing contact... |
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| 2017-06-22 |
gmungoc | JAL-2481 JAL-2593 JAL-2526 further optimisation of... |
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| 2017-06-21 |
gmungoc | JAL-2480 tidy generic initialisations, SequenceFeatures... |
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| 2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-06-08 |
gmungoc | JAL-2526 correct boundary conditions for sequence left... |
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| 2017-06-08 |
gmungoc | JAL-2526 cache first/last residue column positions... |
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| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2526sequenceCursor' into |
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| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into |
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| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor |
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| 2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-04 |
Jim Procter | JAL-2291 fixed broken asserts for SequenceI.getInsertio... |
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| 2017-06-04 |
Jim Procter | JAL-2291 SequenceI.getInsertionsAsBits for convenient... |
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| 2017-06-02 |
gmungoc | JAL-2526 additional tests for findPosition with/without... |
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| 2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
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| 2017-05-30 |
gmungoc | JAL-2526 first draft of findIndex/findPosition with... |
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| 2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue position... |
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| 2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
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| 2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
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| 2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, feature... |
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| 2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into feature... |
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| 2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);... |
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| 2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetS... |
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| 2017-04-27 |
gmungoc | JAL-2480 don't allow null type in SequenceFeature |
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| 2016-11-24 |
tcofoegbu | JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring |
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| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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| 2016-10-05 |
Jim Procter | JAL-2189 format tests |
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| 2016-10-03 |
gmungoc | JAL-2110 additional tests for setDatasetSequence, javad... |
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| 2016-09-28 |
Jim Procter | JAL-2210 JAL-2235 fix deriveSequence test for tightened... |
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| 2016-09-28 |
Jim Procter | JAL-2235 implicit test to check that exception is raise... |
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| 2016-09-16 |
gmungoc | JAL-2157 JAL-1803 refactored Sequence.updatePDBIds... |
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| 2016-09-05 |
gmungoc | JAL-2106 increased coverage for testGetPrimaryDbRefs |
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| 2016-09-04 |
Jim Procter | JAL-1803 JAL-2106 patch tests for tighter PDB Primary... |
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| 2016-08-25 |
Jim Procter | JAL-2106 tighten DBRefEntry primary seq test for PDB |
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| 2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
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| 2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
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| 2016-08-24 |
Jim Procter | JAL-2106 rejig test to minimally verify patch that... |
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| 2016-08-23 |
gmungoc | JAL-2174 markColumns() refactored inside ColumnSelection |
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| 2016-07-04 |
gmungoc | JAL-2110 added another test case (should fail but doesn't) |
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| 2016-07-04 |
gmungoc | Revert "JAL-2110 use shared alignment dataset when... |
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| 2016-07-04 |
gmungoc | JAL-2110 use shared alignment dataset when copying... |
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| 2016-06-23 |
Jim Procter | JAL-2110 SequenceI.isProtein method |
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| 2016-05-31 |
gmungoc | JAL-2110 refactor + tests to allow a dbref version... |
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| 2016-05-17 |
tcofoegbu | JAL-1270 Fixed anntatedPDBFileInputTest and updated... |
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| 2016-04-05 |
Jim Procter | JAL-2046 RFC about cyclic dataset sequence references... |
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| 2016-04-05 |
Jim Procter | JAL-2046 revise test for ambiguous case |
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| 2016-04-05 |
Jim Procter | JAL-2046 ambiguous test for addSequenceFeature when... |
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| 2016-04-05 |
Jim Procter | JAL-2046 RFC on addSequenceFeature behaviour after... |
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| 2016-04-05 |
Jim Procter | JAL-2046 test behaviour of copy constructor in differen... |
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| 2016-04-04 |
Jim Procter | JAL-2046 basic test to make sure any derived sequence... |
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| 2016-04-01 |
gmungoc | JAL-2046 fix for broken test for deriveSequence |
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| 2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
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| 2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
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| 2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
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| 2015-11-30 |
gmungoc | JAL-1270 constructor tests added, compiler warnings... |
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| 2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
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| 2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
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| 2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
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| 2015-09-10 |
Jim Procter | JAL-1645 licencing for new files in test and utils |
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| 2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
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| 2015-07-23 |
tcofoegbu | JAL-1805 modified test setup's so the are ran for group... |
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| 2015-07-08 |
gmungoc | JAL-1759 merge from develop |
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| 2015-07-07 |
tcofoegbu | JAL-1805 test envirionment separation |
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| 2015-06-19 |
tcofoegbu | JAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG |
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| 2015-06-19 |
tcofoegbu | JAL-1270 JUnit to TestNG refactoring |
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