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JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / schemes /
2017-06-23 TZVanaaltentest HMMER colour scheme tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice tree | commitdiff
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour tree | commitdiff
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties tree | commitdiff
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... tree | commitdiff
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect... tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix tree | commitdiff
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix tree | commitdiff
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA... tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-21 gmungocJAL-2360 simplified code to create a new colour scheme tree | commitdiff
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... tree | commitdiff
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a... tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible... tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-14 gmungocJAL-2360 test added tree | commitdiff
2016-12-12 gmungocJAL-2362 return correct lower-case colour; Javadoc... tree | commitdiff
2016-12-02 gmungocUnit tests added, minor refactoring tree | commitdiff
2016-12-02 gmungocJAL-2346 unit test for annotation drop-down list builder tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring tree | commitdiff
2016-11-24 Jim ProcterJAL-2325 apply license to new source files tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 format tests tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110 tree | commitdiff
2016-06-23 Jim ProcterJAL-1270 test group fix tree | commitdiff
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-06-17 Jim ProcterJAL-1027 check that ResidueProperties.codonHash2 is... tree | commitdiff
2013-06-17 Jim ProcterJAL-1312 remove unnecessary methods tree | commitdiff
2013-06-17 Jim ProcterJAL-529 - IUBMB nucleotide ambiguity codes and programm... tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-09-06 jprocterJAL-1167 method and simple tests for printing score... tree | commitdiff