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JAL-3878 update branch from 2.12 merge from 2.11.2
[jalview.git]
/
test
/
jalview
/
ws
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dbsources
/
2023-01-20
Jim Procter
JAL-4102 update 2.12 from 2.11.2.6 patch release -...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
tree
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commitdiff
2023-01-06
Jim Procter
Merge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha...
tree
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commitdiff
2022-12-14
Jim Procter
Merge branch 'develop' into update_212_Dec_merge_with_2...
tree
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commitdiff
2022-11-30
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated Rfam* tests
tree
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commitdiff
2022-11-21
Jim Procter
Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...
tree
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commitdiff
2022-10-11
Jim Procter
JAL-4073 update tests
tree
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commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2022-10-06
Jim Procter
JAL-4073 Pfam retrieval now works via a template includ...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-01-26
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-10-01
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
tree
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commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
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commitdiff
2020-10-28
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-07-28
Jim Procter
JAL-3615 update tests for Rfam/Pfam specific gzip endpoints
tree
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commitdiff
2020-07-28
Jim Procter
JAL-3615 update tests for Rfam/Pfam specific gzip endpoints
tree
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commitdiff
2020-07-21
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Cache applicationProperti...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
tree
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commitdiff
2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequen...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 test method renamed to match code
tree
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commitdiff
2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 format/comment tidy
tree
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commitdiff
2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
tree
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commitdiff
2018-06-06
gmungoc
JAL-2920 unit tests for 3 or more original or variant...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
tree
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commitdiff
2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
tree
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commitdiff
2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
tree
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commitdiff
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 basic test for Description from features with...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-14
Jim Procter
JAL-2758 update uniprot retrieval test
tree
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commitdiff
2017-10-06
Jim Procter
JAL-2758 flag and tests for omitting uniprot accession...
features/JAL-2758_shorteruniprot
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-10
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-08-09
Jim Procter
JAL-2425 test for alignment metadata retrieved from...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-24
gmungoc
JAL-2506 relocate Uniprot binding classes, bind to...
tree
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commitdiff
2017-05-03
gmungoc
JAL-2246 basic sanity test of fetching example accessions
tree
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commitdiff
2017-05-03
gmungoc
JAL-2246 test a Uniprot fetch
tree
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commitdiff
2017-05-03
gmungoc
JAL-2485 JAL-2246 test Uniprot FTS summary
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 format tests
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-05-02
Jim Procter
JAL-1270 move some Network tests to External (require...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 update GPL header for new Xfam tests
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
tree
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
tree
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commitdiff
2016-04-01
gmungoc
JAL-1705 test updated for canonicalised UNIPROT sequenc...
tree
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commitdiff
2016-02-12
gmungoc
JAL-1270 remove trailing space + test
tree
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commitdiff
2015-11-02
tcofoegbu
JAL-1955 Uniprot sequence fetcher refactor
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-10-05
tcofoegbu
JAL-1726 updated test error msg
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in test and utils
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-07-23
tcofoegbu
JAL-1805 modified test setup's so the are ran for group...
tree
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commitdiff
2015-07-08
gmungoc
JAL-1759 merge from develop
tree
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commitdiff
2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
tree
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 test suits import order refactor
features/JAL-1270_JUnit-to-TestNG
features/JAL-1782_JUnit-to-TestNG
tree
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 JUnit to TestNG refactoring
tree
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commitdiff
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1700 Improved the error handling mechanism for...
tree
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commitdiff
2015-05-01
tcofoegbu
JAL-1726 Added external integration test for PDB Rest API
tree
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commitdiff
2015-04-24
tcofoegbu
JAL-1707 bug fix - also search using sequence name
tree
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commitdiff
2015-03-27
tcofoegbu
merge commit
tree
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commitdiff
2015-03-26
tcofoegbu
JAL-1667 updated parseJsonExceptionString method in...
features/JAL-1667_PDBe_Search_API
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 added PDBDocFieldPreference for configuring...
tree
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commitdiff
2015-03-15
Charles Ofoegbu
JAL-1667 updated test and internationalization messages
tree
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commitdiff