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[jalview.git] / src / jalview / appletgui / AlignViewport.java

2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 dropped unnecessary refs	blob \| commitdiff \| diff to current
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	blob \| commitdiff \| diff to current
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile	blob \| commitdiff \| diff to current
2015-06-10	tcofoegbu	JAL-1641 updated applet version	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-04-02	gmungoc	JAL-1690 'scale protein as cDNA' options in Preferences...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-969 hasHiddenRows is now an interface method	blob \| commitdiff \| diff to current
2015-01-22	Charles Ofoegbu	JAL-1553 added applet support for the select-column...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 model and api for feature display list on...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-969 remove unnecessary overrides	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 JAL-535 refactor sequence colour settings...	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 revised applet parameter documentation to stand...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-969 - refactor colourscheme machinery from GUI...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	JAL-969 - refactor initialisation of automatic annotati...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	JAL-902 structure conservation row for applet	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-14	jprocter	(JAL-958) - normalised sequence logo for applet	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-08-15	jprocter	JAL-750 - automaticScrolling=true by default. Refactore...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-02-04	jprocter	group associated annotation and logos JAL-516 JAL-759	blob \| commitdiff \| diff to current
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	JAL-750 and JAL-451	blob \| commitdiff \| diff to current
2011-01-12	jprocter	javascript callback for selection, mousover, and functi...	blob \| commitdiff \| diff to current
2010-12-09	jprocter	refactored and added methods for getting richer Alignme...	blob \| commitdiff \| diff to current
2010-11-12	jprocter	patch for JAL-699 so conservation/consensus threads...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patched for JAL-531 - only display full symbol distribu...	blob \| commitdiff \| diff to current
2010-06-06	jprocter	patch for JAL-542	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	new selection manipulation method	blob \| commitdiff \| diff to current
2010-04-28	jprocter	make groups from selection	blob \| commitdiff \| diff to current
2010-04-26	jprocter	new applet parameters: heightScale and widthScale	blob \| commitdiff \| diff to current
2010-04-23	jprocter	ported basic elements of logo and group annotation...	blob \| commitdiff \| diff to current
2010-04-01	jprocter	todo	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-03-17	jprocter	sortbytree parameter added and undo re-instated for...	blob \| commitdiff \| diff to current
2009-02-06	jprocter	showUnconserved and updated reference	blob \| commitdiff \| diff to current
2008-11-12	jprocter	automatic scrolling option added to view	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-07-18	jprocter	Sequence label colour stored for each sequence group	blob \| commitdiff \| diff to current
2008-04-21	jprocter	centrecolumnlabels format menu item and parameter added...	blob \| commitdiff \| diff to current
2007-10-26	jprocter	use new utility class for platform info	blob \| commitdiff \| diff to current
2007-10-10	jprocter	featureGroup show/hide and newView methods for applet...	blob \| commitdiff \| diff to current
2007-05-03	amwaterhouse	optimize repaints	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	hastext = false	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	quality has text false	blob \| commitdiff \| diff to current
2007-04-17	jprocter	bugfix for jalviewApplet run from command line.	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	Use paintAlignment	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-24	amwaterhouse	output now takes alignment, not just sequences	blob \| commitdiff \| diff to current
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	sequence is char []	blob \| commitdiff \| diff to current
2006-11-24	amwaterhouse	Invert col sel with hidden cols bug fixed	blob \| commitdiff \| diff to current
2006-11-14	amwaterhouse	Commands, history, consensus, refresh updated	blob \| commitdiff \| diff to current
2006-11-13	amwaterhouse	Colours in viewport	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Use AAFrequency final keys	blob \| commitdiff \| diff to current
2006-10-09	jprocter	set firstColumn property for an alignmentView object.	blob \| commitdiff \| diff to current
2006-10-06	amwaterhouse	AAFrequency optimized	blob \| commitdiff \| diff to current
2006-10-03	amwaterhouse	upperCaseBold	blob \| commitdiff \| diff to current
2006-09-27	jprocter	fixed tree building exception when one residue or a...	blob \| commitdiff \| diff to current
2006-09-12	amwaterhouse	hideSequence hide all before recalc consensus	blob \| commitdiff \| diff to current
2006-09-07	jprocter	added copy consensus sequence to consensus annotation...	blob \| commitdiff \| diff to current
2006-09-01	amwaterhouse	MAC moved to viewport	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Dont set group null hideCOls	blob \| commitdiff \| diff to current
2006-08-16	amwaterhouse	Fire alignment changed if seqs hidden / revealed	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	Select revealed seqs	blob \| commitdiff \| diff to current
2006-08-10	amwaterhouse	Invert column selection	blob \| commitdiff \| diff to current
2006-08-08	amwaterhouse	Applet has hidden regions	blob \| commitdiff \| diff to current
2006-07-28	amwaterhouse	getIndex replaced by findSeq in Seqpanel	blob \| commitdiff \| diff to current
2006-07-07	amwaterhouse	SelectionGroup is initially null	blob \| commitdiff \| diff to current
2006-06-14	amwaterhouse	parseAppletParam	blob \| commitdiff \| diff to current
2006-06-07	amwaterhouse	Tooltips for features, links for features added	blob \| commitdiff \| diff to current
2006-05-02	amwaterhouse	Make nullFrame only once	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Keyboard editing added to applet	blob \| commitdiff \| diff to current
2006-03-24	amwaterhouse	Feature settings Root_VamJalview_2_07b+	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Record of featuresDisplayed	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Applet reads in annotation files	blob \| commitdiff \| diff to current
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