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[jalview.git] / src / jalview / bin / JalviewLite.java

2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-09-19	gmungoc	JAL-2172 test and code updates for readonly selection...	blob \| commitdiff
2016-08-18	gmungoc	JAL-2001 return copy of selection in getSelected()	blob \| commitdiff \| diff to current
2016-04-04	Jim Procter	JAL-1551 formatting	blob \| commitdiff \| diff to current
2016-04-04	Jim Procter	JAL-2001 - note about possible side effect on JalviewLi...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-07	Jim Procter	JAL-1894 source formatting	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-18	gmungoc	JAL-1859 reinstated full path to file option (for local...	blob \| commitdiff \| diff to current
2015-09-16	gmungoc	JAL-1859 refactor duplicated code to new HttpUtils...	blob \| commitdiff \| diff to current
2015-09-16	gmungoc	JAL-1859 code tidy, remove 'absolute URL' option	blob \| commitdiff \| diff to current
2015-09-16	gmungoc	JAL-1859 refactor addProtocol, setProtocolState as...	blob \| commitdiff \| diff to current
2015-09-15	gmungoc	JAL-1859 strip file name from applet documentbase	blob \| commitdiff \| diff to current
2015-09-15	gmungoc	JAL-1859 refactoring / debugging added	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1684 align added alignment to match original in...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-09	gmungoc	JAL-857 added debug output to track down document base...	blob \| commitdiff \| diff to current
2015-09-08	Jim Procter	JAL-1695 make enableSplitFrame applet parameter true...	blob \| commitdiff \| diff to current
2015-09-07	Jim Procter	JAL-1522 make installation default 'applet' for the...	blob \| commitdiff \| diff to current
2015-08-24	gmungoc	JAL-845 error message on syserr if supplied files don...	blob \| commitdiff \| diff to current
2015-07-10	tcofoegbu	JAL-1759 code fix to enable testng ant task compile...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-13	gmungoc	JAL-1695 parameter controls whether SplitFrame is enabled	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2015-01-28	Jim Procter	JAL-1565 automatically mark query sequence as the seque...	blob \| commitdiff \| diff to current
2015-01-18	Jim Procter	JAL-1628 employ new AnnotationFile reader method to...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-19	Charles Ofoegbu	JAL-1522 included installation details in log output	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-28	Jim Procter	JAL-1507 bugfix	blob \| commitdiff \| diff to current
2014-05-27	Jim Procter	JAL-1507 added loop to throw dummy javascript calls...	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2013-05-13	Jim Procter	JAL-1289 call oninit callback even if no alignment...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1078 - extend applet cut'n'paste features/annotatio...	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067, JAL-1105 - refactor parser to fit Jalview...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) todo test re refactoring and possible change...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	(JAL-965) new api methods to allow features to be loade...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	(JAL-962) rejig parameter processing order so groups...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-12	jprocter	JAL-927 ensure api method calls that affect GUI state...	blob \| commitdiff \| diff to current
2011-08-15	jprocter	JAL-904 added scrollToRow and scrollToColumn methods...	blob \| commitdiff \| diff to current
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resour...	blob \| commitdiff \| diff to current
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resour...	blob \| commitdiff \| diff to current
2011-07-28	jprocter	added 'since 2.x notes to parameters'. User configurabl...	blob \| commitdiff \| diff to current
2011-07-22	jprocter	default parameter for colours in annotation shading...	blob \| commitdiff \| diff to current
2011-07-03	jprocter	extracted jalviewlite API calls as separate interface...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-05-05	jprocter	improved javascript callback execution thread and provi...	blob \| commitdiff \| diff to current
2011-02-14	jprocter	JAL-621 - also renamed list of javascript handlers	blob \| commitdiff \| diff to current
2011-01-21	jprocter	extended mouseover message with absolute sequence posit...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	removed securityException caused by accessing class...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	additional test - koders.com/java/fid4C9593FE80CE8AA811...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	warn user that no JS callbacks will work by default...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	revised default separator string expression to avoid...	blob \| commitdiff \| diff to current
2011-01-12	jprocter	handlers with no specified alignframe broadcast events...	blob \| commitdiff \| diff to current
2011-01-12	jprocter	1.1 compat	blob \| commitdiff \| diff to current
2011-01-12	jprocter	javascript callback for selection, mousover, and functi...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-07	jprocter	fix for JAL-631	blob \| commitdiff \| diff to current
2010-09-02	jprocter	1.1 compatibility	blob \| commitdiff \| diff to current
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for addin...	blob \| commitdiff \| diff to current
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	refactored external structure viewer binding API calls...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	new ajax api methods for linking existing jmol viewers...	blob \| commitdiff \| diff to current
2010-06-18	jprocter	new jmol/pdb relates api calls	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-26	jprocter	build date output in the About box, and build details...	blob \| commitdiff \| diff to current
2010-04-23	jprocter	default value boolean parameter getter	blob \| commitdiff \| diff to current
2009-11-23	jprocter	initialise current and defaultAlignFrame and debug...	blob \| commitdiff \| diff to current
2009-11-13	jprocter	make fileparse errors easier to debug by dumping file...	blob \| commitdiff \| diff to current
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