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JAL-1620 version bump and release notes
[jalview.git]
/
src
/
jalview
/
datamodel
/
Sequence.java
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
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diff to current
2014-11-12
Jim Procter
javadoc
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diff to current
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
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diff to current
2014-10-10
gmungoc
JAL-1264 added getAlignmentAnnotations(calcId, label)
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diff to current
2014-10-06
Jim Procter
JAL-654 JAL-1264 sequence associated annotation is...
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diff to current
2014-10-06
Jim Procter
JAL-1115 TODO remove use of java.util.Vector
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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diff to current
2014-04-25
Jim Procter
Merge branch 'JAL-1177_prop_rnasecstr' into develop
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diff to current
2014-04-25
Jim Procter
JAL-1177 propagate sequence associated annotation to...
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diff to current
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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diff to current
2013-10-14
Jim Procter
Merge branch 'develop' into dev_from_2_8_1
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diff to current
2013-10-04
Jim Procter
fix for JAL-1380 and efficiency todo for JAL-1381
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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diff to current
2012-10-03
jprocter
formatting
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diff to current
2012-08-31
jprocter
Merge branch 'develop' into menard
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diff to current
2012-08-28
jprocter
javadoc and note about broken semantics for findIndex
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diff to current
2012-07-10
Anne Menard
v2
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diff to current
2012-07-05
Anne Menard
Add support RNAML format
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diff to current
2012-05-24
jprocter
ensure annotation isn't added twice - note - this could...
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diff to current
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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diff to current
2011-02-27
jprocter
first patch for JAL-774 - ensure end is a valid bound...
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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diff to current
2009-06-08
jprocter
apply gpl development license
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-08-06
jprocter
getDBRefs now always returns DBRefArray if it exists...
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commitdiff
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diff to current
2008-01-22
jprocter
new method to get map of sequence positions correspondi...
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commitdiff
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diff to current
2007-11-30
jprocter
javadoc and transferAnnotation method
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diff to current
2007-10-24
jprocter
ensure PDB ids are updated on the dataset sequence
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diff to current
2007-10-02
jprocter
javadoc
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diff to current
2007-09-29
jprocter
updatePDBEntry method to add any PDBEntry from the...
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diff to current
2007-08-30
jprocter
create dataset sequence method
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diff to current
2007-08-22
jprocter
added failsafe fix for cases where null sequence names...
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diff to current
2007-07-31
jprocter
debugging cross references and duplicate sequence db...
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diff to current
2007-07-30
jprocter
javadoc
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diff to current
2007-06-17
jprocter
correct construction of new dataset sequence when resid...
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diff to current
2007-05-10
jprocter
bugfix on copy only referenced annotation in copy const...
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2007-05-02
jprocter
subsequence bound checks and constructor for selectivel...
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2007-04-26
jprocter
get annotation by label string
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diff to current
2007-04-26
amwaterhouse
remove should be removeElement
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2007-04-23
amwaterhouse
remove alignmentAnnotation added
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2007-04-18
jprocter
java 1.1 compliance
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2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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2007-03-19
jprocter
equals operation used for canonicalisation of DBRefList...
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2007-02-07
amwaterhouse
Formatting
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2007-01-31
amwaterhouse
make new dataset seq if residues deleted
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diff to current
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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2007-01-19
jprocter
datasetSequence derive method and some checks
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2007-01-18
amwaterhouse
Set description on copy
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2006-12-21
amwaterhouse
check on sequence length
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2006-12-05
amwaterhouse
Sequence is char []
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2006-11-20
amwaterhouse
Must copy old dbrefs
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2006-11-13
amwaterhouse
Dont readd identical DBRef
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diff to current
2006-11-13
amwaterhouse
Sequence colour moved to viewport
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2006-11-08
amwaterhouse
Set description
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diff to current
2006-10-30
amwaterhouse
deleteSequenceFeature
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diff to current
2006-10-26
amwaterhouse
No need to reduce length if inserting more gaps at...
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diff to current
2006-10-24
amwaterhouse
changeCase, removeGaps moved to commands package
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2006-10-06
jprocter
javadoc
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diff to current
2006-08-21
amwaterhouse
header updated
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diff to current
2006-08-21
jprocter
remove gaps method from AlignFrame.remove_gaps_actionPe...
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diff to current
2006-08-14
jprocter
fixed off by one bug in end sequence from getSubSequenc...
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diff to current
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
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diff to current
2006-08-09
jprocter
new SequenceI method for making a sub sequence from...
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2006-07-21
amwaterhouse
DBRef is an array, not vector
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diff to current
2006-07-18
jprocter
use of GapChars
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diff to current
2006-07-13
amwaterhouse
Sequence is private
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diff to current
2006-07-12
amwaterhouse
sequences are private in SequenceGroup
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diff to current
2006-06-15
amwaterhouse
Maintain status and position only for uniprot parsing
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diff to current
2006-06-09
amwaterhouse
Remove getsfarray
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commitdiff
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diff to current
2006-05-10
amwaterhouse
Changes case to end of alignment
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commitdiff
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diff to current
2006-05-02
amwaterhouse
Toggle case added to popup menu
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diff to current
2006-04-28
amwaterhouse
Make sure end is less than sequence width
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commitdiff
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diff to current
2006-04-28
amwaterhouse
changeCase
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diff to current
2006-03-24
amwaterhouse
Add check if sequence already exists
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2006-03-16
amwaterhouse
HiddenSequence methods
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2006-02-24
amwaterhouse
Features are now an array, not vector
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2006-02-03
amwaterhouse
has ref to annotation
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2005-12-22
amwaterhouse
REGEX CANNOT BE STATIC
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2005-12-06
amwaterhouse
after merge
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2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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diff to current
2005-07-29
amwaterhouse
if endRes <1, calc the endRes
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commitdiff
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
Formatted source
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diff to current
2005-06-08
amwaterhouse
GPL license added
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2005-05-23
jprocter
added some assertions and rangechecks for insert/delete...
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diff to current
2005-05-05
amwaterhouse
pdbfile details not essential to sequence
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diff to current
2005-05-03
amwaterhouse
1.1 compatible
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diff to current
2005-04-06
jprocter
New method for helping to quickly map different aligned...
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diff to current
2005-03-09
amwaterhouse
allows deletion of chars
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git://source.jalview.org / jalview.git / history