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[jalview.git] / src / jalview / gui / AlignViewport.java

2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1830 dropped reference counts for mappings, instead...	blob \| commitdiff \| diff to current
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-08-05	Jim Procter	JAL-1822 create dataset sequences if they aren’t alread...	blob \| commitdiff \| diff to current
2015-07-03	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	JAL-1619 align the added sequences to match what they...	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1691 trackpad scrolling goes to full width even...	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-892varnaToProject	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	blob \| commitdiff \| diff to current
2015-06-18	gmungoc	JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop	blob \| commitdiff \| diff to current
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile	blob \| commitdiff \| diff to current
2015-06-10	tcofoegbu	JAL-1641 updated applet version	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1622 code tidy (+Junit) of collateForPdb()	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-05-11	James Procter	JAL-1690 make splitframe enabled by default	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-23	gmungoc	JAL-1681 create mappings before AlignFrame to ensure...	blob \| commitdiff \| diff to current
2015-04-13	gmungoc	JAL-1695 parameter controls whether SplitFrame is enabled	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-04-07	gmungoc	JAL-1691 linked scrollling in split frame (Desktop)	blob \| commitdiff \| diff to current
2015-04-02	gmungoc	JAL-1690 'scale protein as cDNA' options in Preferences...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-969 hasHiddenRows is now an interface method	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-969 drop the hiddenColumns flag in favour of checki...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2015-01-20	Charles Ofoegbu	JAL-1553 enhancement of column selection by annotation...	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Merge branch 'features/JAL-1553_select-columns-by-annot...	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Refactored AnnotationColumnChoser and AnnotationColorCh...	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 merge commit	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 implementation of column selection by annotati...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 merge commit	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Change the Html export to utilize svg	blob \| commitdiff \| diff to current
2014-11-25	Jim Procter	Merge branch 'bug/JAL-689' into develop	blob \| commitdiff \| diff to current
2014-11-25	Jim Procter	patch for JAL-1599 - annotation row constructed by...	blob \| commitdiff \| diff to current
2014-11-25	Charles Ofoegbu	merge commit	blob \| commitdiff \| diff to current
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	house keeping features/JAL-1541_BioJsMSAViewer-export-option	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	Merge branch 'features/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	House keeping	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-11-05	gmungoc	JAL-1152 new Structure tab on Preferences for SS deriva...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help docume...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 bug fix for 'no sort' case + tests for autocal...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 model and api for feature display list on...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 JAL-535 refactor sequence colour settings...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-24	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-05	jprocter	JAL-976 fix AACon name typo in source and GUI	blob \| commitdiff \| diff to current
2012-08-07	jprocter	Debug message associated with TODO for JAL-1136 - re...	blob \| commitdiff \| diff to current
2012-07-08	jprocter	JAL-976 - storing service parameters on the view model	blob \| commitdiff \| diff to current
2012-06-19	jprocter	JAL-975 - bespoke AACons settings object to save curren...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-969 - refactor colourscheme machinery from GUI...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	JAL-969 - refactor initialisation of automatic annotati...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-14	jprocter	(JAL-958) - normalised sequence logo for applet	blob \| commitdiff \| diff to current
2011-10-11	jprocter	normalised logo rendering (JAL-958)	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-08-11	janengelhardt	JAL-885; hasRNAStructure method was introduced to Align...	blob \| commitdiff \| diff to current
2011-08-10	janengelhardt	JAL-885; Structure conservation row is just added if...	blob \| commitdiff \| diff to current
2011-08-08	janengelhardt	JAL-891; structure logo is adapted to two char's; Missi...	blob \| commitdiff \| diff to current
2011-08-08	janengelhardt	JAL-891; sequence logos are available on structure...	blob \| commitdiff \| diff to current
2011-07-31	janengelhardt	JAL-885; StructureConservation row is displayed at...	blob \| commitdiff \| diff to current
2011-07-29	janengelhardt	JAL-885; Implementation of StructureFrequency.java...	blob \| commitdiff \| diff to current
2011-07-09	jprocter	refactored from PopupMenu (for JAL-860)	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-02-18	jprocter	JAL-574	blob \| commitdiff \| diff to current
2011-02-04	jprocter	javadoc	blob \| commitdiff \| diff to current
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	blob \| commitdiff \| diff to current
2010-12-09	jprocter	refactored and added methods for getting richer Alignme...	blob \| commitdiff \| diff to current
2010-11-12	jprocter	patch for JAL-699 so conservation/consensus threads...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-20	jprocter	avoid race condition by setting sequence logo flag...	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patched for JAL-531 - only display full symbol distribu...	blob \| commitdiff \| diff to current
2010-06-08	jprocter	followSelections flag now set via user preferences...	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	new selection manipulation method	blob \| commitdiff \| diff to current
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